| Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project Management Group Liefer Laura A. 51 Wetterstrand Kris A. 51 Good Peter J. 51 ... nature 447 (7146), 799-816, 2007 | 6070 | 2007 |
| Optimization of de novo transcriptome assembly from next-generation sequencing data Y Surget-Groba, JI Montoya-Burgos Genome research 20 (10), 1432-1440, 2010 | 423 | 2010 |
| Molecular phylogeny, evolutionary rates, and divergence timing of the symbiotic dinoflagellate genus Symbiodinium X Pochon, JI Montoya-Burgos, B Stadelmann, J Pawlowski Molecular phylogenetics and evolution 38 (1), 20-30, 2006 | 354 | 2006 |
| Historical biogeography of the catfish genus Hypostomus (Siluriformes: Loricariidae), with implications on the diversification of Neotropical ichthyofauna JI Montoya‐Burgos Molecular Ecology 12 (7), 1855-1867, 2003 | 288 | 2003 |
| Analyses of deep mammalian sequence alignments and constraint predictions for 1% of the human genome EH Margulies, GM Cooper, G Asimenos, DJ Thomas, CN Dewey, A Siepel, ... Genome research 17 (6), 760-774, 2007 | 254 | 2007 |
| Changes in Hox genes’ structure and function during the evolution of the squamate body plan N Di-Poi, JI Montoya-Burgos, H Miller, O Pourquié, MC Milinkovitch, ... Nature 464 (7285), 99-103, 2010 | 185 | 2010 |
| Phylogeny of the order Zoantharia (Anthozoa, Hexacorallia) based on the mitochondrial ribosomal genes F Sinniger, JI Montoya-Burgos, P Chevaldonné, J Pawlowski Marine Biology 147, 1121-1128, 2005 | 178 | 2005 |
| Recombination explains isochores in mammalian genomes JI Montoya-Burgos, P Boursot, N Galtier Trends in genetics 19 (3), 128-130, 2003 | 134 | 2003 |
| Early history of mammals is elucidated with the ENCODE multiple species sequencing data S Nikolaev, JI Montoya-Burgos, EH Margulies, NCS Program, ... PLoS genetics 3 (1), e2, 2007 | 128 | 2007 |
| Origin of the Mesozoa inferred from 18S rRNA gene sequences. J Pawlowski, JI Montoya-Burgos, JF Fahrni, J Wüest, L Zaninetti Molecular biology and evolution 13 (8), 1128-1132, 1996 | 112 | 1996 |
| Molecular systematic and historical biogeography of the armored Neotropical catfishes Hypoptopomatinae and Neoplecostominae (Siluriformes: Loricariidae) MC Chiachio, C Oliveira, JI Montoya-Burgos Molecular Phylogenetics and Evolution 49 (2), 606-617, 2008 | 111 | 2008 |
| Life-history traits drive the evolutionary rates of mammalian coding and noncoding genomic elements SI Nikolaev, JI Montoya-Burgos, K Popadin, L Parand, EH Margulies, ... Proceedings of the National Academy of Sciences 104 (51), 20443-20448, 2007 | 108 | 2007 |
| Phylogenetic relationships of the Loricariidae (Siluriformes) based on mitochondrial rRNA gene sequences JI Montoya-Burgos, S Muller, C Weber, J Pawlowski Phylogeny and classification of Neotropical fishes 27, 363-374, 1998 | 108 | 1998 |
| Molecular phylogeny of the highly diversified catfish subfamily Loricariinae (Siluriformes, Loricariidae) reveals incongruences with morphological classification R Covain, S Fisch-Muller, C Oliveira, JH Mol, JI Montoya-Burgos, S Dray Molecular phylogenetics and evolution 94, 492-517, 2016 | 97 | 2016 |
| Unexpected diversity in the catfish Pseudancistrus brevispinis reveals dispersal routes in a Neotropical center of endemism: the Guyanas Region YP Cardoso, JI MONTOYA‐BURGOS Molecular Ecology 18 (5), 947-964, 2009 | 64 | 2009 |
| Harmonizing hybridization dissonance in conservation CS Quilodrán, JI Montoya-Burgos, M Currat Communications Biology 3 (1), 391, 2020 | 62 | 2020 |
| Atypical relaxation of structural constraints in Hox gene clusters of the green anole lizard N Di-Poï, JI Montoya-Burgos, D Duboule Genome research 19 (4), 602-610, 2009 | 62 | 2009 |
| Molecular phylogeny of the genus Pseudoplatystoma (): Biogeographic and evolutionary implications JP Torrico, N Hubert, E Desmarais, F Duponchelle, JN Rodriguez, ... Molecular Phylogenetics and Evolution 51 (3), 588-594, 2009 | 52 | 2009 |
| Assessing phylogenetic dependence of morphological traits using co-inertia prior to investigate character evolution in Loricariinae catfishes R Covain, S Dray, S Fisch-Muller, JI Montoya-Burgos Molecular Phylogenetics and Evolution 46 (3), 986-1002, 2008 | 51 | 2008 |
| Phylogenetic relationships within Hypostomus (Siluriformes: Loricariidae) and related genera based on mitochondrial D-loop sequences JI Montoya-Burgos, C Weber, PY Le Bail Revue suisse de Zoologie 109 (2), 369-382, 2002 | 48 | 2002 |
