DeepViral: prediction of novel virus–host interactions from protein sequences and infectious disease phenotypes W Liu-Wei, Ş Kafkas, J Chen, NJ Dimonaco, J Tegnér, R Hoehndorf Bioinformatics 37 (17), 2722-2729, 2021 | 53 | 2021 |
No one tool to rule them all: prokaryotic gene prediction tool annotations are highly dependent on the organism of study NJ Dimonaco, W Aubrey, K Kenobi, A Clare, CJ Creevey Bioinformatics 38 (5), 1198-1207, 2022 | 44 | 2022 |
Computational analysis of SARS-CoV-2 and SARS-like coronavirus diversity in human, bat and pangolin populations NJ Dimonaco, M Salavati, BB Shih Viruses 13 (1), 49, 2020 | 23 | 2020 |
Accessory genes define species-specific routes to antibiotic resistance L Dillon, NJ Dimonaco, CJ Creevey Life science alliance 7 (4), 2024 | 4 | 2024 |
StORF-Reporter: finding genes between genes CJC Nicholas J Dimonaco, Amanda Clare, Kim Kenobi, Wayne Aubrey Nucleic Acids Research 51 (21), 11504–11517, 2023 | 2* | 2023 |
Lineage-specific microbial protein prediction enables large-scale exploration of protein ecology within the human gut MA Schmitz, NJ Dimonaco, T Clavel, TCA Hitch bioRxiv, 2024.05. 29.596415, 2024 | 1 | 2024 |
Uncovering the dark matter of the metagenome one read at a time N Dimonaco, C Creevey, R Hoehndorf, M Kulmanov, W Liuwei, A Clare, ... Access Microbiology 1 (1A), 864, 2019 | 1 | 2019 |
PyamilySeq: A Python Tool for Interpretable Gene (Re) Clustering and Pangenomic Inference Across Species and Genera NJ Dimonaco arXiv preprint arXiv:2407.19328, 2024 | | 2024 |
63. The effect of feeding a calcium peroxide feed additive to mitigate enteric methane emissions in lambs G Pugh, OC Carballo, T Yan, C Creevey, N Dimonaco, K Lawther, S Huws Animal-science proceedings 15 (1), 69-70, 2024 | | 2024 |
O04 Understanding the key role of accessory genes in AMR phenotype through interpretable machine learning techniques L Dillon, NJ Dimonaco, CJ Creevey JAC-Antimicrobial Resistance 5 (Supplement_2), dlad066. 004, 2023 | | 2023 |
FrameRate: learning the coding potential of unassembled metagenomic reads W Liu-Wei, W Aubrey, A Clare, R Hoehndorf, CJ Creevey, NJ Dimonaco bioRxiv, 2022.09. 16.508314, 2022 | | 2022 |
Automated pseudogene detection reveals insights into historical gene sharing dynamics in prokaryotes NJ Dimonaco, W Aubrey, A Clare, K Kenobi, C Creevey Access Microbiology 4 (5), po0654, 2022 | | 2022 |
ORFs, StORFs and Pseudogenes: Uncovering Novel Genomic Knowledge in Prokaryotic and Viral Genomes N Dimonaco Aberystwyth University, 2022 | | 2022 |