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Nicola Bordin
Nicola Bordin
University College London
Dirección de correo verificada de ucl.ac.uk
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CATH: increased structural coverage of functional space
I Sillitoe, N Bordin, N Dawson, VP Waman, P Ashford, HM Scholes, ...
Nucleic Acids Research 49 (D1), D266-D273, 2021
3992021
SARS-CoV-2 spike protein predicted to form complexes with host receptor protein orthologues from a broad range of mammals
SD Lam, N Bordin, VP Waman, H Scholes, P Ashford, N Sen, L van Dorp, ...
Scientific Reports 10 (1), 16471, 2020
1512020
Contrastive learning on protein embeddings enlightens midnight zone
M Heinzinger, M Littmann, I Sillitoe, N Bordin, C Orengo, B Rost
NAR Genomics and Bioinformatics 4 (2), lqac043, 2022
862022
Biocontrol traits of Bacillus licheniformis GL174, a culturable endophyte of Vitis vinifera cv. Glera
S Nigris, E Baldan, A Tondello, F Zanella, N Vitulo, G Favaro, V Guidolin, ...
BMC Microbiology 18 (1), 133, 2018
852018
AlphaFold2 reveals commonalities and novelties in protein structure space for 21 model organisms
N Bordin, I Sillitoe, V Nallapareddy, C Rauer, SD Lam, VP Waman, N Sen, ...
Communications Biology 6 (1), 160, 2023
722023
Planctomycetes attached to algal surfaces: Insight into their genomes
M Faria, N Bordin, J Kizina, J Harder, D Devos, OM Lage
Genomics, 2017
592017
Novel machine learning approaches revolutionize protein knowledge
N Bordin, C Dallago, M Heinzinger, S Kim, M Littmann, C Rauer, ...
Trends in Biochemical Sciences 48 (4), 345-359, 2023
522023
CATHe: Detection of remote homologues for CATH superfamilies using embeddings from protein language models
V Nallapareddy, N Bordin, I Sillitoe, M Heinzinger, M Littmann, VP Waman, ...
Bioinformatics 39 (1), btad029, 2023
342023
Tracing Evolution Through Protein Structures: Nature Captured in a Few Thousand Folds
N Bordin, I Sillitoe, JG Lees, C Orengo
Front. Mol. Biosci. 8: 668184. doi: 10.3389/fmolb, 2021
332021
SARS-CoV-2 structural coverage map reveals viral protein assembly, mimicry, and hijacking mechanisms
SI O’Donoghue, A Schafferhans, N Sikta, C Stolte, S Kaur, BK Ho, ...
Molecular Systems Biology 17 (9), e10079, 2021
302021
Pex24 and Pex32 are required to tether peroxisomes to the ER for organelle biogenesis, positioning and segregation in yeast
F Wu, R de Boer, AM Krikken, A Akşit, N Bordin, DP Devos, IJ van der Klei
Journal of Cell Science 133 (16), 2020
302020
Clustering FunFams using sequence embeddings improves EC purity
M Littmann, N Bordin, M Heinzinger, K Schütze, C Dallago, C Orengo, ...
Bioinformatics 37 (20), 3449-3455, 2021
252021
Characterizing and explaining the impact of disease-associated mutations in proteins without known structures or structural homologs
N Sen, I Anishchenko, N Bordin, I Sillitoe, S Velankar, D Baker, C Orengo
Briefings in Bioinformatics 23 (4), bbac187, 2022
232022
Closely related Lak megaphages replicate in the microbiomes of diverse animals
MA Crisci, LX Chen, AE Devoto, AL Borges, N Bordin, R Sachdeva, A Tett, ...
iScience, 102875, 2021
222021
PVCbase: an integrated web resource for the PVC bacterial proteomes
N Bordin, JC González-Sánchez, DP Devos
Database 2018, bay042, 2018
202018
The opportunities and challenges posed by the new generation of deep learning-based protein structure predictors
M Varadi, N Bordin, C Orengo, S Velankar
Current Opinion in Structural Biology 79, 102543, 2023
192023
Broad functional profiling of fission yeast proteins using phenomics and machine learning
M Rodríguez-López, N Bordin, J Lees, H Scholes, S Hassan, Q Saintain, ...
Elife 12, RP88229, 2023
182023
Chainsaw: protein domain segmentation with fully convolutional neural networks
J Wells, A Hawkins-Hooker, N Bordin, I Sillitoe, B Paige, C Orengo
Bioinformatics, btae296, 2024
162024
Hansenula polymorpha Pex37 is a peroxisomal membrane protein required for organelle fission and segregation
R Singh, S Manivannan, AM Krikken, R de Boer, N Bordin, DP Devos, ...
The FEBS Journal 287 (9), 1742-1757, 2020
142020
InterPro: the protein sequence classification resource in 2025
M Blum, A Andreeva, LC Florentino, SR Chuguransky, T Grego, E Hobbs, ...
Nucleic Acids Research, gkae1082, 2024
11*2024
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