R. Gonzalo Parra

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Diego U. FerreiroCONICET, FCEyN, Universidad de Buenos AiresDirección de correo verificada de qb.fcen.uba.ar
Peter G. WolynesBullard-Welch Foundation Professor of Science, Professor of Chemistry, Professor of PhysicsDirección de correo verificada de rice.edu
Maria Ines FreibergerSorbonne Université, CNRS, Laboratoire de Biologie Computationnelle et Quantitative, LCQB, F-75005Dirección de correo verificada de qb.fcen.uba.ar
Rocío EspadaPostdoc at ESPCIDirección de correo verificada de espci.fr
Leandro RaduskyMiMARKDirección de correo verificada de mimark.es
Alexander Miguel MonzonAssistant Professor, Department of Biomedical Sciences, University of PadovaDirección de correo verificada de unipd.it
Johannes SödingMax-Planck-Institute for Multidisciplinary Sciences, GöttingenDirección de correo verificada de mpinat.mpg.de
Nikolaos PapadopoulosSenior Scientist - BioinformaticsDirección de correo verificada de univie.ac.at
Cesar A. Ramirez-SarmientoAssociate Professor, Pontificia Universidad Catolica de ChileDirección de correo verificada de uc.cl
Alfonso ValenciaICREA Professor. Barcelona Supercomputing Center.Dirección de correo verificada de bsc.es
Marcelo MartiProf of Biological Chemistry, University of Buenos AiresDirección de correo verificada de qi.fcen.uba.ar
Oliver StegleGerman Cancer Research Center (DKFZ) & EMBL HeidelbergDirección de correo verificada de dkfz.de
Hana SusakGSKDirección de correo verificada de gsk.com
Miguel Fernandez-MartinBarcelona Supercomputing Center (BSC-CNS)Dirección de correo verificada de bsc.es
Miriam Poley-GilBarcelona Supercomputing Center (BSC-CNS)Dirección de correo verificada de bsc.es

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R. Gonzalo Parra

Researcher, Barcelona Supercomputing Center

Dirección de correo verificada de bsc.es - Página principal

bioinformatics computational biophysics protein structures transcriptional regulation single cell omics


Título Ordenar por citas Ordenar por año Ordenar por título	Citado por Citado por	Año
Protein Frustratometer 2: a tool to localize energetic frustration in protein molecules, now with electrostatics RG Parra, NP Schafer, LG Radusky, MY Tsai, AB Guzovsky, PG Wolynes, ... Nucleic acids research 44 (W1), W356-W360, 2016	232	2016
Protein frustratometer: a tool to localize energetic frustration in protein molecules M Jenik, RG Parra, LG Radusky, A Turjanski, PG Wolynes, DU Ferreiro Nucleic acids research 40 (W1), W348-W351, 2012	176	2012
RepeatsDB: a database of tandem repeat protein structures T Di Domenico, E Potenza, I Walsh, R Gonzalo Parra, M Giollo, ... Nucleic acids research 42 (D1), D352-D357, 2014	76	2014
Local frustration around enzyme active sites MI Freiberger, AB Guzovsky, PG Wolynes, RG Parra, DU Ferreiro Proceedings of the National Academy of Sciences 116 (10), 4037-4043 …, 2019	65	2019
Structural and energetic characterization of the ankyrin repeat protein family RG Parra, R Espada, N Verstraete, DU Ferreiro PLoS computational biology 11 (12), e1004659, 2015	63	2015
PROSSTT: probabilistic simulation of single-cell RNA-seq data for complex differentiation processes N Papadopoulos, RG Parra, J Söding Bioinformatics 35 (18), 3517-3519, 2019	54	2019
PDBe-KB: collaboratively defining the biological context of structural data Nucleic acids research 50 (D1), D534-D542, 2022	42	2022
FrustratometeR: an R-package to compute Local frustration in protein structures, point mutants and MD simulations AO Rausch, MI Freiberger, CO Leonetti, DM Luna, LG Radusky, ... Bioinformatics, btab176, 2021	41	2021
Detecting repetitions and periodicities in proteins by tiling the structural space RG Parra, R Espada, IE Sánchez, MJ Sippl, DU Ferreiro The Journal of Physical Chemistry B 117 (42), 12887-12897, 2013	39	2013
Reconstructing complex lineage trees from scRNA-seq data using MERLoT RG Parra, N Papadopoulos, L Ahumada-Arranz, J El Kholtei, ... Nucleic Acids Research, gkz706, 261768 ( corresponding authors), 2019	32	2019
Highlights from the 1st ISCB Latin American Student Council Symposium 2014 RG Parra, FL Simonetti, M Hasenahuer, G Olguin-Orellana, S Avinash K BMC bioinformatics 16 (3), A1, 2015	29*	2015
Repeat Proteins challenge the concept of structural domains R Espada, RG Parra, MJ Sippl, T Mora, AM Walczak, DU Ferreiro, ... Biochemical Society Transactions 43 (5), 844-849, 2015	28	2015
Capturing coevolutionary signals in repeat proteins R Espada, RG Parra, T Mora, AM Walczak, DU Ferreiro BMC Bioinformatics 16, 207, 2015	27	2015
The upside of failure: how regional student groups learn from their mistakes T Mishra, RG Parra, T Abeel PLoS Computational Biology 10 (8), e1003768, 2014	24	2014
Impacts of biomedical hashtag-based Twitter campaign:# DHPSP utilization for promotion of open innovation in digital health, patient safety, and personalized medicine M Kletecka-Pulker, H Mondal, D Wang, RG Parra, AY Maigoro, S Lee, ... Current Research in Biotechnology 3, 146-153, 2021	21	2021
INSECT: IN-silico SEarch for Co-occurring Transcription factors CO Rohr, RG Parra, P Yankilevich, C Perez-Castro, ... Bioinformatics 29 (22), 2852-2858, 2013	21	2013
INSECT 2.0: a web-server for genome-wide cis-regulatory modules prediction RG Parra, CO Rohr, D Koile, C Perez-Castro, P Yankilevich, ... Bioinformatics, btv726, 2015	19	2015
Reflections on a journey: a retrospective of the ISCB Student Council symposium series M Hassan, AA Namasivayam, D DeBlasio, N Fatima, B Siranosian, ... BMC bioinformatics 19, 1-8, 2018	18	2018
Local energetic frustration conservation in protein families and superfamilies MI Freiberger, V Ruiz-Serra, C Pontes, M Romero-Durana, ... Nature Communications 14 (1), 8379, 2023	17*	2023
Global network of computational biology communities: ISCB's Regional Student Groups breaking barriers S Shome, RG Parra, N Fatima, AM Monzon, B Cuypers, Y Moosa, ... F1000Research 8, 2019	13	2019

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