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Jason Papin
Jason Papin
Harrison Distinguished Teaching Professor of Biomedical Engineering, University of Virginia
Dirección de correo verificada de virginia.edu - Página principal
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A community-driven global reconstruction of human metabolism
I Thiele, N Swainston, RMT Fleming, A Hoppe, S Sahoo, MK Aurich, ...
Nature biotechnology 31 (5), 419-425, 2013
12292013
Applications of genome‐scale metabolic reconstructions
MA Oberhardt, BØ Palsson, JA Papin
Molecular systems biology 5 (1), 320, 2009
10032009
Reconstruction of cellular signalling networks and analysis of their properties
JA Papin, T Hunter, BO Palsson, S Subramaniam
Nature reviews Molecular cell biology 6 (2), 99-111, 2005
7062005
Genome-scale microbial in silico models: the constraints-based approach
ND Price, JA Papin, CH Schilling, BO Palsson
Trends in biotechnology 21 (4), 162-169, 2003
5382003
Comparison of network-based pathway analysis methods
JA Papin, J Stelling, ND Price, S Klamt, S Schuster, BO Palsson
Trends in biotechnology 22 (8), 400-405, 2004
5032004
MEMOTE for standardized genome-scale metabolic model testing
C Lieven, ME Beber, BG Olivier, FT Bergmann, M Ataman, P Babaei, ...
Nature biotechnology 38 (3), 272-276, 2020
467*2020
Metabolic pathways in the post-genome era
JA Papin, ND Price, SJ Wiback, DA Fell, BO Palsson
Trends in biochemical sciences 28 (5), 250-258, 2003
4572003
Metabolic network reconstruction of Chlamydomonas offers insight into light‐driven algal metabolism
RL Chang, L Ghamsari, A Manichaikul, EFY Hom, S Balaji, W Fu, Y Shen, ...
Molecular systems biology 7 (1), 518, 2011
3822011
Flux balance analysis in the era of metabolomics
JM Lee, EP Gianchandani, JA Papin
Briefings in bioinformatics 7 (2), 140-150, 2006
3752006
Genome-Scale Metabolic Network Analysis of the Opportunistic Pathogen Pseudomonas aeruginosa PAO1
MA Oberhardt, J Puchałka, KE Fryer, VAP Martins dos Santos, JA Papin
Journal of bacteriology 190 (8), 2790-2803, 2008
3242008
Integration of expression data in genome-scale metabolic network reconstructions
AS Blazier, JA Papin
Frontiers in physiology 3, 299, 2012
3182012
Genome-Scale Reconstruction and Analysis of the Pseudomonas putida KT2440 Metabolic Network Facilitates Applications in Biotechnology
J Puchałka, MA Oberhardt, M Godinho, A Bielecka, D Regenhardt, ...
PLoS computational biology 4 (10), e1000210, 2008
3102008
Dynamic analysis of integrated signaling, metabolic, and regulatory networks
J Min Lee, EP Gianchandani, JA Eddy, JA Papin
PLoS computational biology 4 (5), e1000086, 2008
3092008
Functional integration of a metabolic network model and expression data without arbitrary thresholding
PA Jensen, JA Papin
Bioinformatics 27 (4), 541-547, 2011
2952011
Multiscale computational models of complex biological systems
J Walpole, JA Papin, SM Peirce
Annual review of biomedical engineering 15 (1), 137-154, 2013
2782013
Hierarchical thinking in network biology: the unbiased modularization of biochemical networks
JA Papin, JL Reed, BO Palsson
Trends in biochemical sciences 29 (12), 641-647, 2004
2592004
Extreme pathway lengths and reaction participation in genome-scale metabolic networks
JA Papin, ND Price, BØ Palsson
Genome research 12 (12), 1889-1900, 2002
2002002
Systems analysis of metabolism in the pathogenic trypanosomatid Leishmania major
AK Chavali, JD Whittemore, JA Eddy, KT Williams, JA Papin
Molecular systems biology 4 (1), 177, 2008
1972008
The application of flux balance analysis in systems biology
EP Gianchandani, AK Chavali, JA Papin
Wiley Interdisciplinary Reviews: Systems Biology and Medicine 2 (3), 372-382, 2010
1962010
Reconciled rat and human metabolic networks for comparative toxicogenomics and biomarker predictions
EM Blais, KD Rawls, BV Dougherty, ZI Li, GL Kolling, P Ye, A Wallqvist, ...
Nature communications 8 (1), 14250, 2017
1812017
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Artículos 1–20