| Chromerid genomes reveal the evolutionary path from photosynthetic algae to obligate intracellular parasites YH Woo, H Ansari, TD Otto, CM Klinger, M Kolisko, J Michálek, A Saxena, ... elife 4, e06974, 2015 | 235 | 2015 |
| Genomic expression catalogue of a global collection of BCG vaccine strains show evidence for highly diverged metabolic and cell-wall adaptations AM Abdallah, GA Hill-Cawthorne, TD Otto, F Coll, JA Guerra-Assunção, ... Scientific reports 5 (1), 15443, 2015 | 108 | 2015 |
| Genome-scale comparison of expanded gene families in Plasmodium ovale wallikeri and Plasmodium ovale curtisi with Plasmodium malariae and with other Plasmodium species HR Ansari, TJ Templeton, AK Subudhi, A Ramaprasad, J Tang, F Lu, ... International journal for parasitology 46 (11), 685-696, 2016 | 103 | 2016 |
| Identification of a novel conjugative plasmid in mycobacteria that requires both type IV and type VII secretion R Ummels, AM Abdallah, V Kuiper, A Aâjoud, M Sparrius, R Naeem, ... MBio 5 (5), 10.1128/mbio. 01744-14, 2014 | 73 | 2014 |
| Candidate Essential Genes in Burkholderia cenocepacia J2315 Identified by Genome-Wide TraDIS YC Wong, M Abd El Ghany, R Naeem, KW Lee, YC Tan, A Pain, S Nathan Frontiers in microbiology 7, 1288, 2016 | 68 | 2016 |
| READSCAN: a fast and scalable pathogen discovery program with accurate genome relative abundance estimation R Naeem, M Rashid, A Pain Bioinformatics 29 (3), 391-392, 2013 | 64 | 2013 |
| A genetic barcode of SARS-CoV-2 for monitoring global distribution of different clades during the COVID-19 pandemic Q Guan, M Sadykov, S Mfarrej, S Hala, R Naeem, R Nugmanova, ... International Journal of Infectious Diseases 100, 216-223, 2020 | 62 | 2020 |
| SARS-CoV-2 genomes from Saudi Arabia implicate nucleocapsid mutations in host response and increased viral load T Mourier, M Shuaib, S Hala, S Mfarrej, F Alofi, R Naeem, A Alsomali, ... Nature communications 13 (1), 601, 2022 | 61 | 2022 |
| Enteric infections circulating during Hajj seasons, 2011–2013 M Abd El Ghany, M Alsomali, M Almasri, EP Regalado, R Naeem, ... Emerging infectious diseases 23 (10), 1640, 2017 | 57 | 2017 |
| Comprehensive Evaluation of Toxoplasma gondii VEG and Neospora caninum LIV Genomes with Tachyzoite Stage Transcriptome and Proteome Defines Novel … A Ramaprasad, T Mourier, R Naeem, TB Malas, E Moussa, A Panigrahi, ... Plos one 10 (4), e0124473, 2015 | 38 | 2015 |
| Integrated transcriptomic and proteomic analysis of pathogenic mycobacteria and their esx-1 mutants reveal secretion-dependent regulation of ESX-1 substrates and WhiB6 as a … AM Abdallah, EM Weerdenburg, Q Guan, R Ummels, S Borggreve, ... Plos one 14 (1), e0211003, 2019 | 28 | 2019 |
| The Population Structure of Vibrio cholerae from the Chandigarh Region of Northern India M Abd El Ghany, J Chander, A Mutreja, M Rashid, GA Hill-Cawthorne, ... PLoS Neglected Tropical Diseases 8 (7), e2981, 2014 | 27 | 2014 |
| Saudi Arabian SARS-CoV-2 genomes implicate a mutant Nucleocapsid protein in modulating host interactions and increased viral load in COVID-19 patients T Mourier, M Shuaib, S Hala, S Mfarrej, F Alofi, R Naeem, A Alsomali, ... medRxiv, 2021.05. 06.21256706, 2021 | 25 | 2021 |
| Genomic and phenotypic analyses reveal the emergence of an atypical Salmonella enterica serovar Senftenberg variant in China M Abd El Ghany, X Shi, Y Li, HR Ansari, GA Hill-Cawthorne, YS Ho, ... Journal of Clinical Microbiology 54 (8), 2014-2022, 2016 | 20 | 2016 |
| Genetic Determinants Associated With in Vivo Survival of Burkholderia cenocepacia in the Caenorhabditis elegans Model YC Wong, M Abd El Ghany, RNM Ghazzali, SJ Yap, CC Hoh, A Pain, ... Frontiers in Microbiology 9, 1118, 2018 | 18 | 2018 |
| Influx of diverse, drug resistant and transmissible Plasmodium falciparum into a malaria-free setting in Qatar A Al-Rumhi, Z Al-Hashami, S Al-Hamidhi, A Gadalla, R Naeem, ... BMC infectious diseases 20, 1-10, 2020 | 16 | 2020 |
| Genomic expression catalogue of a global collection of BCG vaccine strains show evidence for highly diverged metabolic and cell-wall adaptations. Sci Rep 5: 15443 AM Abdallah, GA Hill-Cawthorne, TD Otto, F Coll, JA Guerra-Assunção, ... | 13 | 2015 |
| SVAMP: sequence variation analysis, maps and phylogeny R Naeem, L Hidayah, MD Preston, TG Clark, A Pain Bioinformatics 30 (15), 2227-2229, 2014 | 4 | 2014 |
| Genome-wide transposon mutagenesis analysis of Burkholderia pseudomallei reveals essential genes for in vitro and in vivo survival YC Wong, R Naeem, M Abd El Ghany, CC Hoh, A Pain, S Nathan Frontiers in cellular and infection microbiology 12, 1062682, 2022 | 3 | 2022 |
| Genome sequence of a multidrug-resistant strain of Stenotrophomonas maltophilia with carbapenem resistance, isolated from King Abdullah Medical City, Makkah, Saudi Arabia AM Abdel-Haleem, Z Rchiad, BK Khan, AM Abdallah, R Naeem, ... Genome Announcements 3 (5), 10.1128/genomea. 01166-15, 2015 | 3 | 2015 |
