| Evolutionarily conserved replication timing profiles predict long-range chromatin interactions and distinguish closely related cell types T Ryba, I Hiratani, J Lu, M Itoh, M Kulik, J Zhang, TC Schulz, AJ Robins, ... Genome research 20 (6), 761-770, 2010 | 699 | 2010 |
| Global reorganization of replication domains during embryonic stem cell differentiation I Hiratani, T Ryba, M Itoh, T Yokochi, M Schwaiger, CW Chang, Y Lyou, ... PLoS biology 6 (10), e245, 2008 | 652 | 2008 |
| Genome-wide dynamics of replication timing revealed by in vitro models of mouse embryogenesis I Hiratani, T Ryba, M Itoh, J Rathjen, M Kulik, B Papp, E Fussner, ... Genome research 20 (2), 155-169, 2010 | 364 | 2010 |
| The Xenopus receptor tyrosine kinase Xror2 modulates morphogenetic movements of the axial mesoderm and neuroectoderm via Wnt signaling H Hikasa, M Shibata, I Hiratani, M Taira Oxford University Press for The Company of Biologists Limited 129 (22), 5227 …, 2002 | 264 | 2002 |
| G9a selectively represses a class of late-replicating genes at the nuclear periphery T Yokochi, K Poduch, T Ryba, J Lu, I Hiratani, M Tachibana, Y Shinkai, ... Proceedings of the National Academy of Sciences 106 (46), 19363-19368, 2009 | 185 | 2009 |
| Replication timing and transcriptional control: beyond cause and effect—part II I Hiratani, S Takebayashi, J Lu, DM Gilbert Current opinion in genetics & development 19 (2), 142-149, 2009 | 181 | 2009 |
| Chromosome engineering allows the efficient isolation of vertebrate neocentromeres WH Shang, T Hori, NMC Martins, A Toyoda, S Misu, N Monma, I Hiratani, ... Developmental cell 24 (6), 635-648, 2013 | 176 | 2013 |
| Genome-scale analysis of replication timing: from bench to bioinformatics T Ryba, D Battaglia, BD Pope, I Hiratani, DM Gilbert Nature protocols 6 (6), 870-895, 2011 | 149 | 2011 |
| Differentiation-induced replication-timing changes are restricted to AT-rich/long interspersed nuclear element (LINE)-rich isochores I Hiratani, A Leskovar, DM Gilbert Proceedings of the National Academy of Sciences 101 (48), 16861-16866, 2004 | 141 | 2004 |
| Replication timing as an epigenetic mark I Hiratani, DM Gilbert Epigenetics 4 (2), 93-97, 2009 | 132 | 2009 |
| Epigenetic differences between naïve and primed pluripotent stem cells S Takahashi, S Kobayashi, I Hiratani Cellular and Molecular Life Sciences 75, 1191-1203, 2018 | 124 | 2018 |
| Space and time in the nucleus developmental control of replication timing and chromosome architecture DM Gilbert, SI Takebayashi, T Ryba, J Lu, BD Pope, KA Wilson, I Hiratani Cold Spring Harbor symposia on quantitative biology 75, 143-153, 2010 | 121 | 2010 |
| Replication timing: a fingerprint for cell identity and pluripotency T Ryba, I Hiratani, T Sasaki, D Battaglia, M Kulik, J Zhang, S Dalton, ... PLoS computational biology 7 (10), e1002225, 2011 | 104 | 2011 |
| ReplicationDomain: a visualization tool and comparative database for genome-wide replication timing data N Weddington, A Stuy, I Hiratani, T Ryba, T Yokochi, DM Gilbert BMC bioinformatics 9, 1-11, 2008 | 102 | 2008 |
| Genome-wide stability of the DNA replication program in single mammalian cells S Takahashi, H Miura, T Shibata, K Nagao, K Okumura, M Ogata, ... Nature genetics 51 (3), 529-540, 2019 | 97 | 2019 |
| Domain-wide regulation of DNA replication timing during mammalian development BD Pope, I Hiratani, DM Gilbert Chromosome Research 18, 127-136, 2010 | 89 | 2010 |
| Single-cell DNA replication profiling identifies spatiotemporal developmental dynamics of chromosome organization H Miura, S Takahashi, R Poonperm, A Tanigawa, S Takebayashi, ... Nature genetics 51 (9), 1356-1368, 2019 | 84 | 2019 |
| Requirements of Lim1, a Drosophila LIM-homeobox gene, for normal leg and antennal development T Tsuji, A Sato, I Hiratani, M Taira, K Saigo, T Kojima Development 127 (20), 4315-4323, 2000 | 60 | 2000 |
| Selective degradation of excess Ldb1 by Rnf12/RLIM confers proper Ldb1 expression levels and Xlim-1/Ldb1 stoichiometry in Xenopus organizer functions I Hiratani, N Yamamoto, T Mochizuki, S Ohmori, M Taira Oxford University Press for The Company of Biologists Limited 130 (17), 4161 …, 2003 | 51 | 2003 |
| Multifaceted Hi-C benchmarking: what makes a difference in chromosome-scale genome scaffolding? M Kadota, O Nishimura, H Miura, K Tanaka, I Hiratani, S Kuraku Gigascience 9 (1), giz158, 2020 | 42 | 2020 |
