| Revisions to the classification, nomenclature, and diversity of eukaryotes SM Adl, D Bass, CE Lane, J Lukeš, CL Schoch, A Smirnov, S Agatha, ... Journal of Eukaryotic Microbiology 66 (1), 4-119, 2019 | 1327 | 2019 |
| CBOL protist working group: barcoding eukaryotic richness beyond the animal, plant, and fungal kingdoms J Pawlowski, S Audic, S Adl, D Bass, L Belbahri, C Berney, SS Bowser, ... PLoS biology 10 (11), e1001419, 2012 | 606 | 2012 |
| Between a pod and a hard test: the deep evolution of amoebae S Kang, AK Tice, FW Spiegel, JD Silberman, T Pánek, I Čepička, ... Molecular biology and evolution 34 (9), 2258-2270, 2017 | 201 | 2017 |
| Critical taxonomic revision of parabasalids with description of one new genus and three new species I Cepicka, V Hampl, J Kulda Protist 161 (3), 400-433, 2010 | 190 | 2010 |
| Cryptic species within the Tetratrichomonas gallinarum species complex revealed by molecular polymorphism I Cepicka, K Kutišová, J Tachezy, J Kulda, J Flegr Veterinary Parasitology 128 (1-2), 11-21, 2005 | 115 | 2005 |
| Organelles that illuminate the origins of Trichomonas hydrogenosomes and Giardia mitosomes MM Leger, M Kolisko, R Kamikawa, CW Stairs, K Kume, I Čepička, ... Nature ecology & evolution 1 (4), 0092, 2017 | 114 | 2017 |
| Sergeia podlipaevi gen. nov., sp. nov. (Trypanosomatidae, Kinetoplastida), a parasite of biting midges (Ceratopogonidae, Diptera) M Svobodová, L Zídková, I Čepička, M Oborník, J Lukeš, J Votýpka International journal of systematic and evolutionary microbiology 57 (2 …, 2007 | 88 | 2007 |
| Retortamonad flagellates are closely related to diplomonads—implications for the history of mitochondrial function in eukaryote evolution JD Silberman, AGB Simpson, J Kulda, I Cepicka, V Hampl, PJ Johnson, ... Molecular biology and evolution 19 (5), 777-786, 2002 | 86 | 2002 |
| Biodiversity of avian trypanosomes L Zídková, I Cepicka, J Szabová, M Svobodová Infection, Genetics and Evolution 12 (1), 102-112, 2012 | 85 | 2012 |
| Tetratrichomonads from the oral cavity and respiratory tract of humans K Kutisova, J Kulda, I Cepicka, J Flegr, B Koudela, J Teras, J Tachezy Parasitology 131 (3), 309-319, 2005 | 76 | 2005 |
| A complex of three new white-spored, sympatric, and host range limited Geosmithia species M KOLAŘÍK, A Kubatova, I ČEPIČKA, S PAŽOUTOVÁ Mycological Research 109 (12), 1323-1336, 2005 | 73 | 2005 |
| New evolutionary lineages, unexpected diversity, and host specificity in the parabasalid genus Tetratrichomonas I Cepicka, V Hampl, J Kulda, J Flegr Molecular Phylogenetics and Evolution 39 (2), 542-551, 2006 | 71 | 2006 |
| Genomics of new ciliate lineages provides insight into the evolution of obligate anaerobiosis J Rotterová, E Salomaki, T Pánek, W Bourland, D Žihala, P Táborský, ... Current Biology 30 (11), 2037-2050. e6, 2020 | 68 | 2020 |
| Molecular phylogeny of diplomonads and enteromonads based on SSU rRNA, alpha-tubulin and HSP90 genes: Implications for the evolutionary history of the double karyomastigont of … M Kolisko, I Cepicka, V Hampl, J Leigh, AJ Roger, J Kulda, AGB Simpson, ... BMC Evolutionary Biology 8, 1-14, 2008 | 64 | 2008 |
| A wide diversity of previously undetected free‐living relatives of diplomonads isolated from marine/saline habitats M Kolisko, JD Silberman, I Cepicka, N Yubuki, K Takishita, A Yabuki, ... Environmental Microbiology 12 (10), 2700-2710, 2010 | 62 | 2010 |
| Critical analysis of the topology and rooting of the parabasalian 16S rRNA tree V Hampl, I Cepicka, J Flegr, J Tachezy, J Kulda Molecular Phylogenetics and Evolution 32 (3), 711-723, 2004 | 58 | 2004 |
| Was the mitochondrion necessary to start eukaryogenesis? V Hampl, I Čepička, M Eliáš Trends in microbiology 27 (2), 96-104, 2019 | 56 | 2019 |
| Arginine deiminase pathway enzymes: evolutionary history in metamonads and other eukaryotes L Novák, Z Zubáčová, A Karnkowska, M Kolisko, M Hroudová, CW Stairs, ... BMC evolutionary biology 16, 1-14, 2016 | 50 | 2016 |
| Evolution of Archamoebae: morphological and molecular evidence for pelobionts including Rhizomastix, Entamoeba, Iodamoeba, and Endolimax E Ptáčková, AY Kostygov, LV Chistyakova, L Falteisek, AO Frolov, ... Protist 164 (3), 380-410, 2013 | 48 | 2013 |
| SlowFaster, a user-friendly program for slow-fast analysis and its application on phylogeny of Blastocystis M Kostka, M Uzlikova, I Cepicka, J Flegr BMC bioinformatics 9, 1-6, 2008 | 48 | 2008 |
