Diffusion probabilistic modeling of protein backbones in 3d for the motif-scaffolding problem BL Trippe, J Yim, D Tischer, D Baker, T Broderick, R Barzilay, T Jaakkola arXiv preprint arXiv:2206.04119, 2022 | 250 | 2022 |
Iterative refinement graph neural network for antibody sequence-structure co-design W Jin, J Wohlwend, R Barzilay, T Jaakkola arXiv preprint arXiv:2110.04624, 2021 | 144 | 2021 |
Gut pathogen colonization precedes bloodstream infection in the neonatal intensive care unit DJ Schwartz, N Shalon, K Wardenburg, A DeVeaux, MA Wallace, ... Science translational medicine 15 (694), eadg5562, 2023 | 29 | 2023 |
Deep learning enhances the prediction of HLA class I-presented CD8+ T cell epitopes in foreign pathogens J Wohlwend, A Nathan, N Shalon, CR Crain, R Tano-Menka, B Goldberg, ... Nature Machine Intelligence, 1-12, 2025 | | 2025 |
Precise genotyping of circular mobile elements from metagenomic data uncovers human-associated plasmids with recent common ancestors N Shalon, DA Relman, E Yaffe Genome Research 32 (5), 986-1003, 2022 | | 2022 |
# 8: Microbiome and immune disruption accompany mouse death in a gnotobiotic mouse model of neonatal sepsis D Schwartz, K Wardenburg, N Shalon, J Ning, T Crofts, A D’Souza, ... Journal of the Pediatric Infectious Diseases Society 10 (Supplement_2), S6-S7, 2021 | | 2021 |