| Traceability, reproducibility and wiki-exploration for “à-la-carte” reconstructions of genome-scale metabolic models M Aite, M Chevallier, C Frioux, C Trottier, J Got, MP Cortés, SN Mendoza, ... PLoS computational biology 14 (5), e1006146, 2018 | 121 | 2018 |
| Dispersal strategies shape persistence and evolution of human gut bacteria F Hildebrand, TI Gossmann, C Frioux, E Özkurt, PN Myers, P Ferretti, ... Cell host & microbe 29 (7), 1167-1176. e9, 2021 | 105 | 2021 |
| Meneco, a Topology-Based Gap-Filling Tool Applicable to Degraded Genome-Wide Metabolic Networks S Prigent, C Frioux, SM Dittami, S Thiele, A Larhlimi, G Collet, F Gutknecht, ... PLOS Computational Biology 13 (1), e1005276, 2017 | 103 | 2017 |
| From bag-of-genes to bag-of-genomes: metabolic modelling of communities in the era of metagenome-assembled genomes C Frioux, D Singh, T Korcsmaros, F Hildebrand Computational and Structural Biotechnology Journal 18, 1722-1734, 2020 | 93 | 2020 |
| Metagenomic assessment of the global diversity and distribution of bacteria and fungi M Bahram, T Netherway, C Frioux, P Ferretti, LP Coelho, S Geisen, P Bork, ... Environmental Microbiology 23 (1), 316-326, 2021 | 84 | 2021 |
| Metage2Metabo, microbiota-scale metabolic complementarity for the identification of key species A Belcour, C Frioux, M Aite, A Bretaudeau, F Hildebrand, A Siegel Elife 9, e61968, 2020 | 80 | 2020 |
| Enterosignatures define common bacterial guilds in the human gut microbiome C Frioux, R Ansorge, E Özkurt, CG Nedjad, J Fritscher, C Quince, ... Cell Host & Microbe 31 (7), 1111-1125. e6, 2023 | 51 | 2023 |
| Metabolic complementarity between a brown alga and associated 1 cultivable bacteria provide indications of beneficial interactions B Burgunter-Delamare, H Kleinjan, C Frioux, E Fremy, SM Dittami, ... Frontiers in Marine Science, 2020 | 47 | 2020 |
| Scalable and exhaustive screening of metabolic functions carried out by microbial consortia C Frioux, E Fremy, C Trottier, A Siegel Bioinformatics 34 (17), i934-i943, 2018 | 39 | 2018 |
| The genome of Ectocarpus subulatus–A highly stress-tolerant brown alga SM Dittami, E Corre, L Brillet-Guéguen, AP Lipinska, N Pontoizeau, M Aite, ... Marine genomics 52, 100740, 2020 | 31 | 2020 |
| Hybrid Metabolic Network Completion C Frioux, T Schaub, S Schellhorn, A Siegel, P Wanko International Conference on Logic Programming and Nonmonotonic Reasoning …, 2017 | 25 | 2017 |
| Genome–Scale Metabolic Networks Shed Light on the Carotenoid Biosynthesis Pathway in the Brown Algae Saccharina japonica and Cladosiphon okamuranus D Nègre, M Aite, A Belcour, C Frioux, L Brillet-Guéguen, X Liu, P Bordron, ... Antioxidants 8 (11), 564, 2019 | 23 | 2019 |
| The functional microbiome of grapevine throughout plant evolutionary history and lifetime P Fournier, L Pellan, D Barroso-Bergadà, DA Bohan, T Candresse, ... Advances in Ecological Research 67, 27-99, 2022 | 21 | 2022 |
| Crystal structure and biochemical characterization of a manganese superoxide dismutase from Chaetomium thermophilum T Haikarainen, C Frioux, LQ Zhnag, DC Li, AC Papageorgiou Biochimica et Biophysica Acta (BBA)-Proteins and Proteomics 1844 (2), 422-429, 2014 | 19 | 2014 |
| Community‐scale models of microbiomes: Articulating metabolic modelling and metagenome sequencing K Cerk, P Ugalde‐Salas, CG Nedjad, M Lecomte, C Muller, DJ Sherman, ... Microbial Biotechnology 17 (1), e14396, 2024 | 12 | 2024 |
| Combining graph and flux-based structures to decipher phenotypic essential metabolites within metabolic networks J Laniau, C Frioux, J Nicolas, C Baroukh, MP Cortes, J Got, C Trottier, ... PeerJ 5, e3860, 2017 | 11 | 2017 |
| Robustness analysis of metabolic predictions in algal microbial communities based on different annotation pipelines E Karimi, E Geslain, A Belcour, C Frioux, M Aïte, A Siegel, E Corre, ... PeerJ 9, e11344, 2021 | 10 | 2021 |
| Inferring and comparing metabolism across heterogeneous sets of annotated genomes using AuCoMe A Belcour, J Got, M Aite, L Delage, J Collén, C Frioux, C Leblanc, ... Genome Research 33 (6), 972-987, 2023 | 9* | 2023 |
| Insights into the potential for mutualistic and harmful host–microbe interactions affecting brown alga freshwater acclimation H KleinJan, C Frioux, G Califano, M Aite, E Fremy, E Karimi, E Corre, ... Molecular Ecology 32 (3), 703-723, 2023 | 7 | 2023 |
| Using automated reasoning to explore the metabolism of unconventional organisms: a first step to explore host–microbial interactions C Frioux, SM Dittami, A Siegel Biochemical Society Transactions 48 (3), 901-913, 2020 | 5 | 2020 |
Anne SiegelResearch Director, CNRS, IRISA (Rennes, France)ایمیل تأیید شده در irisa.fr
