دنبال کردن
Adam M. Phillippy
Adam M. Phillippy
Director, Center for Genomics and Data Science Research, NHGRI, NIH
ایمیل تأیید شده در nih.gov - صفحهٔ اصلی
عنوان
نقل شده توسط
نقل شده توسط
سال
Canu: scalable and accurate long-read assembly via adaptive k-mer weighting and repeat separation‏
S Koren, BP Walenz, K Berlin, JR Miller, NH Bergman, AM Phillippy‏
Genome research 27 (5), 722-736, 2017‏
66692017
Versatile and open software for comparing large genomes‏
S Kurtz, A Phillippy, AL Delcher, M Smoot, M Shumway, C Antonescu, ...‏
Genome biology 5, 1-9, 2004‏
57562004
High throughput ANI analysis of 90K prokaryotic genomes reveals clear species boundaries‏
C Jain, LM Rodriguez-R, AM Phillippy, KT Konstantinidis, S Aluru‏
Nature communications 9 (1), 5114, 2018‏
38952018
Mash: fast genome and metagenome distance estimation using MinHash‏
BD Ondov, TJ Treangen, P Melsted, AB Mallonee, NH Bergman, S Koren, ...‏
Genome biology 17, 1-14, 2016‏
28392016
The complete sequence of a human genome‏
S Nurk, S Koren, A Rhie, M Rautiainen, AV Bzikadze, A Mikheenko, ...‏
Science 376 (6588), 44-53, 2022‏
26052022
Evolution of genes and genomes on the Drosophila phylogeny‏
AG Clark, MB Eisen, DR Smith, CM Bergman, B Oliver, TA Markow, ...‏
Nature 450 (7167), 203-18, 2007‏
23102007
Towards complete and error-free genome assemblies of all vertebrate species‏
A Rhie, SA McCarthy, O Fedrigo, J Damas, G Formenti, S Koren, ...‏
Nature 592 (7856), 737-746, 2021‏
22242021
Merqury: reference-free quality, completeness, and phasing assessment for genome assemblies‏
A Rhie, BP Walenz, S Koren, AM Phillippy‏
Genome biology 21, 1-27, 2020‏
21122020
Interactive metagenomic visualization in a Web browser‏
BD Ondov, NH Bergman, AM Phillippy‏
BMC bioinformatics 12, 1-10, 2011‏
20932011
Nanopore sequencing and assembly of a human genome with ultra-long reads‏
M Jain, S Koren, KH Miga, J Quick, AC Rand, TA Sasani, JR Tyson, ...‏
Nature biotechnology 36 (4), 338-345, 2018‏
20332018
MUMmer4: A fast and versatile genome alignment system‏
G Marçais, AL Delcher, AM Phillippy, R Coston, SL Salzberg, A Zimin‏
PLoS computational biology 14 (1), e1005944, 2018‏
18162018
The Harvest suite for rapid core-genome alignment and visualization of thousands of intraspecific microbial genomes‏
TJ Treangen, BD Ondov, S Koren, AM Phillippy‏
Genome Biol 15 (11), 524, 2014‏
16312014
Accurate circular consensus long-read sequencing improves variant detection and assembly of a human genome‏
AM Wenger, P Peluso, WJ Rowell, PC Chang, RJ Hall, GT Concepcion, ...‏
Nature biotechnology 37 (10), 1155-1162, 2019‏
15472019
Fast algorithms for large-scale genome alignment and comparison‏
AL Delcher, A Phillippy, J Carlton, SL Salzberg‏
Nucleic acids research 30 (11), 2478-2483, 2002‏
12562002
Hybrid error correction and de novo assembly of single-molecule sequencing reads‏
S Koren, MC Schatz, BP Walenz, J Martin, JT Howard, G Ganapathy, ...‏
Nature biotechnology 30 (7), 693-700, 2012‏
12152012
Assembling large genomes with single-molecule sequencing and locality-sensitive hashing‏
K Berlin, S Koren, CS Chin, JP Drake, JM Landolin, AM Phillippy‏
Nature biotechnology 33 (6), 623-630, 2015‏
10922015
Evaluation of GRCh38 and de novo haploid genome assemblies demonstrates the enduring quality of the reference assembly‏
VA Schneider, T Graves-Lindsay, K Howe, N Bouk, HC Chen, PA Kitts, ...‏
Genome research 27 (5), 849-864, 2017‏
10822017
GAGE: A critical evaluation of genome assemblies and assembly algorithms‏
SL Salzberg, AM Phillippy, A Zimin, D Puiu, T Magoc, S Koren, ...‏
Genome research 22 (3), 557-567, 2012‏
9002012
Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species‏
KR Bradnam, JN Fass, A Alexandrov, P Baranay, M Bechner, I Birol, ...‏
GigaScience 2 (1), 2047-217X-2-10, 2013‏
8092013
Integrating Hi-C links with assembly graphs for chromosome-scale assembly‏
J Ghurye, A Rhie, BP Walenz, A Schmitt, S Selvaraj, M Pop, AM Phillippy, ...‏
PLoS computational biology 15 (8), e1007273, 2019‏
7972019
سیستم در حال حاضر قادر به انجام عملکرد نیست. بعداً دوباره امتحان کنید.
مقاله‌ها 1–20