| Spatial maps of T cell receptors and transcriptomes reveal distinct immune niches and interactions in the adaptive immune response S Liu, JB Iorgulescu, S Li, M Borji, IA Barrera-Lopez, V Shanmugam, ... Immunity 55 (10), 1940-1952. e5, 2022 | 82 | 2022 |
| Integrative genotyping of cancer and immune phenotypes by long-read sequencing L Penter, M Borji, A Nagler, H Lyu, WS Lu, N Cieri, K Maurer, G Oliveira, ... Nature Communications 15 (1), 32, 2024 | 21 | 2024 |
| Coordinated Immune Cell Networks in the Bone Marrow Microenvironment Define the Graft versus Leukemia Response with Adoptive Cellular Therapy A Maurer, CY Park, S Mani, M Borji, C Shin, L Penter, JR Brenner, ... Blood 142, 363, 2023 | 7 | 2023 |
| Helicase-assisted continuous editing for programmable mutagenesis of endogenous genomes XD Chen, Z Chen, G Wythes, Y Zhang, BC Orr, G Sun, YK Chao, ... Science 386 (6718), eadn5876, 2024 | 5 | 2024 |
| Human Airway and Alveolar Organoids from BAL Fluid MY Liu, B Chen, M Borji, C Garcia de Alba Rivas, AFM Dost, AL Moye, ... American journal of respiratory and critical care medicine 209 (12), 1501-1504, 2024 | 1 | 2024 |
| Coordinated immune networks in leukemia bone marrow microenvironments distinguish response to cellular therapy K Maurer, CY Park, S Mani, M Borji, F Raths, KH Gouin III, L Penter, Y Jin, ... Science Immunology 10 (103), eadr0782, 2025 | | 2025 |
| Genome-scale spatial mapping of the Hodgkin lymphoma microenvironment identifies tumor cell survival factors V Shanmugam, N Tokcan, D Chafamo, S Sullivan, M Borji, H Martin, ... bioRxiv, 2025.01. 24.631210, 2025 | | 2025 |
| A Clonally Expanded Nodal T Cell Population Diagnosed As T Cell Lymphoma after CAR-T Therapy J Weir, K Maurer, A Nagler, H Bharadwaj, J Shapiro, S Alakwe, V Kumar, ... Blood 144, 910, 2024 | | 2024 |
| Heterogeneity of PD-1+ regulatory T Cells after Low-Dose IL-2 Therapy for Patients with Chronic Graft-Versus-Host Disease S Ikegawa, T Asano, B Shim, M Borji, HT Kim, S Li, KJ Livak, GJ Freeman, ... Blood 144, 379, 2024 | | 2024 |
| Scalable imaging-free spatial genomics through computational reconstruction C Hu, M Borji, GJ Marrero, V Kumar, JA Weir, SV Kammula, EZ Macosko, ... bioRxiv, 2024 | | 2024 |
| Genome-Scale High-Resolution Spatial Mapping of the Pro-Tumorigenic Cellular Niche in Classic Hodgkin Lymphoma V Shanmugam, N Tokcan, D Chafamo, S Sullivan, H Martin, GA Newton, ... Blood 142, 175, 2023 | | 2023 |
