| Expanded encyclopaedias of DNA elements in the human and mouse genomes JE Moore, MJ Purcaro, HE Pratt, CB Epstein, N Shoresh, J Adrian, T Kawli, ... Nature 583 (7818), 699-710, 2020 | 1526 | 2020 |
| A deep generative model for multi-view profiling of single-cell RNA-seq and ATAC-seq data G Li, S Fu, S Wang, C Zhu, B Duan, C Tang, X Chen, G Chuai, P Wang, ... Genome biology 23 (1), 20, 2022 | 65 | 2022 |
| Differential analysis of chromatin accessibility and histone modifications for predicting mouse developmental enhancers S Fu, Q Wang, JE Moore, MJ Purcaro, HE Pratt, K Fan, C Gu, C Jiang, ... Nucleic acids research 46 (21), 11184-11201, 2018 | 51 | 2018 |
| Deep Surveying of the Transcriptional and Alternative Splicing Signatures for Decidual CD8+ T Cells at the First Trimester of Human Healthy Pregnancy W Zeng, X Liu, Z Liu, Y Zheng, T Yu, S Fu, X Li, J Zhang, S Zhang, X Ma, ... Frontiers in immunology 9, 937, 2018 | 28 | 2018 |
| Learning for single-cell assignment B Duan, C Zhu, G Chuai, C Tang, X Chen, S Chen, S Fu, G Li, Q Liu Science advances 6 (44), eabd0855, 2020 | 27 | 2020 |
| Detection of ovarian cancer using plasma cell-free DNA methylomes H Lu, Y Liu, J Wang, S Fu, L Wang, C Huang, J Li, L Xie, D Wang, D Li, ... Clinical Epigenetics 14 (1), 74, 2022 | 20 | 2022 |
| Integrating multiple references for single-cell assignment B Duan, S Chen, X Chen, C Zhu, C Tang, S Wang, Y Gao, S Fu, Q Liu Nucleic acids research 49 (14), e80-e80, 2021 | 16 | 2021 |
| Single-cell omics: experimental workflow, data analyses and applications F Sun, H Li, D Sun, S Fu, L Gu, X Shao, Q Wang, X Dong, B Duan, F Xing, ... Science China Life Sciences, 1-98, 2024 | 11 | 2024 |
| Privacy-preserving integration of multiple institutional data for single-cell type identification with scPrivacy S Chen, B Duan, C Zhu, C Tang, S Wang, Y Gao, S Fu, L Fan, Q Yang, ... Science China Life Sciences 66 (5), 1183-1195, 2023 | 11 | 2023 |
| Identification of MRAP protein family as broad‐spectrum GPCR modulators M Wang, X Wang, B Jiang, Y Zhai, J Zheng, L Yang, X Tai, Y Li, S Fu, J Xu, ... Clinical and Translational Medicine 12 (11), e1091, 2022 | 11 | 2022 |
| Personalized tumor combination therapy optimization using the single-cell transcriptome C Tang, S Fu, X Jin, W Li, F Xing, B Duan, X Cheng, X Chen, S Wang, ... Genome Medicine 15 (1), 105, 2023 | 10 | 2023 |
| Elucidation of the dimeric interplay of dual MRAP2 proteins in the zebrafish M Wang, Y Zhai, L Lu, C Zhang, N Li, S Xue, D Cheng, S Fu, Q Liu, ... Journal of Cellular Physiology 236 (9), 6472-6480, 2021 | 4 | 2021 |
| MetaMed: Linking Microbiota Functions with Medicine Therapeutics H Zhao, S Fu, Y Yu, Z Zhang, P Li, Q Ma, W Jia, K Ning, S Qu, Q Liu Msystems 4 (5), 10.1128/msystems. 00413-19, 2019 | 3 | 2019 |
| Neo-epitope identification by weakly-supervised peptide-TCR binding prediction Y Gao, Y Gao, W Li, S Wu, F Xing, C Zhou, S Fu, G Chuai, Q Chen, ... bioRxiv, 2023.08. 02.550128, 2023 | 2 | 2023 |
| Inter3D: Capture of TAD Reorganization Endows Variant Patterns of Gene Transcription T Ding, S Fu, X Zhang, F Yang, J Zhang, H Xu, J Yang, C Chen, Y Shi, ... Genomics, Proteomics & Bioinformatics 22 (3), qzae034, 2024 | | 2024 |