| OMA orthology in 2024: improved prokaryote coverage, ancestral and extant GO enrichment, a revamped synteny viewer and more in the OMA Ecosystem AM Altenhoff, AW Vesztrocy, C Bernard, CM Train, A Nicheperovich, ... Nucleic Acids Research, gkad1020, 2024 | 34 | 2024 |
| Inference of phylogenetic trees directly from raw sequencing reads using Read2Tree D Dylus, A Altenhoff, S Majidian, FJ Sedlazeck, C Dessimoz Nature Biotechnology 42 (1), 139-147, 2024 | 32 | 2024 |
| Hap10: reconstructing accurate and long polyploid haplotypes using linked reads S Majidian, MH Kahaei, D de Ridder BMC Bioinformatics, 2020 | 17 | 2020 |
| Genomic variant benchmark: if you cannot measure it, you cannot improve it S Majidian, DP Agustinho, CS Chin, FJ Sedlazeck, M Mahmoud Genome biology 24 (1), 221, 2023 | 16 | 2023 |
| Minimum error correction based haplotype assembly: considerations for long read data S Majidian, MH Kahaei, D de Ridder PLOS one, 2020 | 11 | 2020 |
| PhaseME: Automatic rapid assessment of phasing quality and phasing improvement S Majidian, FJ Sedlazeck Gigascience 9 (7), giaa078, 2020 | 10 | 2020 |
| Responses of cucumber (Cucumis sativus L.) rhizosphere microbial community to some agronomic management practices R Ezazi, M Ahmadzadeh, S Majidian, E Stefani, M Pindo, C Donati FEMS microbiology ecology 97 (8), fiab107, 2021 | 9 | 2021 |
| The GIAB genomic stratifications resource for human reference genomes N Dwarshuis, D Kalra, J McDaniel, P Sanio, P Alvarez Jerez, B Jadhav, ... Nature communications 15 (1), 9029, 2024 | 7 | 2024 |
| Haplotype assembly using manifold optimization and error correction mechanism MM Mohades, S Majidian, MH Kahaei IEEE Signal Processing Letters 26 (6), 868 - 872, 2019 | 7 | 2019 |
| NGS based haplotype assembly using matrix completion S Majidian, MH Kahaei PLoS ONE 14 (3), e0214455, 2019 | 7 | 2019 |
| The third international hackathon for applying insights into large-scale genomic composition to use cases in a wide range of organisms K Walker, D Kalra, R Lowdon, G Chen, D Molik, DC Soto, F Dabbaghie, ... F1000Research 11, 530, 2022 | 6 | 2022 |
| Matrix completion with weighted constraint for haplotype estimation S Majidian, MM Mohades, MH Kahaei Digital Signal Processing 108, 102880, 2021 | 6 | 2021 |
| When less is more: sketching with minimizers in genomics M Ndiaye, S Prieto-Baños, LM Fitzgerald, A Yazdizadeh Kharrazi, ... Genome biology 25 (1), 270, 2024 | 4 | 2024 |
| Anti-angiogenic effects of testis-specific gene antigen 10 on primary endothelial cells E Valipour, VT Nooshabadi, S Mahdipour, S Shabani, L Farhady-Tooli, ... Gene 754, 144856, 2020 | 4 | 2020 |
| Orthology inference at scale with FastOMA S Majidian, Y Nevers, A Yazdizadeh Kharrazi, A Warwick Vesztrocy, ... Nature methods, 1-4, 2025 | 2 | 2025 |
| OMAMO: orthology-based alternative model organism selection A Nicheperovich, AM Altenhoff, C Dessimoz, S Majidian Bioinformatics 38 (10), 2965-2966, 2022 | 2 | 2022 |
| Quest for Orthologs in the era of biodiversity genomics F Langschied, N Bordin, S Cosentino, D Fuentes-Palacios, N Glover, ... Genome Biology and Evolution, evae224, 2024 | 1 | 2024 |
| Transcriptomic data reveals the dynamics of terpenoids biosynthetic pathway of fenugreek SL Javan, AB Kashkooli, AA Shojaeiyan, S Majidian BMC genomics 25 (1), 390, 2024 | 1 | 2024 |
| The fifth international hackathon for developing computational cloud-based tools and resources for pan-structural variation and genomics SK Deb, D Kalra, J Kubica, E Stricker, VQ Truong, Q Zeng, CJ Fiscus, ... F1000Research 13, 708, 2024 | 1 | 2024 |
| Matrix Completion Using Graph Total Variation Based on Directed Laplacian Matrix A Ahmadi, S Majidian, MH Kahaei Circuits, Systems, and Signal Processing, 1-8, 2021 | 1 | 2021 |
Christophe DessimozProfessor at UNIL and Director of SIB Swiss Institute of Bioinformaticsایمیل تأیید شده در unil.ch
