دنبال کردن
Ivan Kulakovskiy
Ivan Kulakovskiy
Institute of Protein Research RAS
ایمیل تأیید شده در vigg.ru - صفحهٔ اصلی
عنوان
نقل شده توسط
نقل شده توسط
سال
A promoter-level mammalian expression atlas‏
TF Consortium‏
Nature 507 (7493), 462-470, 2014‏
18092014
HOCOMOCO: towards a complete collection of transcription factor binding models for human and mouse via large-scale ChIP-Seq analysis‏
IV Kulakovskiy, IE Vorontsov, IS Yevshin, RN Sharipov, AD Fedorova, ...‏
Nucleic acids research 46 (D1), D252-D259, 2018‏
8692018
EpiFactors: a comprehensive database of human epigenetic factors and complexes‏
YA Medvedeva, A Lennartsson, R Ehsani, IV Kulakovskiy, IE Vorontsov, ...‏
Database 2015, bav067, 2015‏
3142015
Effects of cytosine methylation on transcription factor binding sites‏
YA Medvedeva, AM Khamis, IV Kulakovskiy, W Ba-Alawi, MSI Bhuyan, ...‏
BMC Genomics 15 (1), 119, 2014‏
3062014
HOCOMOCO: a comprehensive collection of human transcription factor binding sites models‏
IV Kulakovskiy, YA Medvedeva, U Schaefer, AS Kasianov, IE Vorontsov, ...‏
Nucleic Acids Research 41 (D1), D195-D202, 2013‏
2912013
HOCOMOCO: expansion and enhancement of the collection of transcription factor binding sites models‏
IV Kulakovskiy, IE Vorontsov, IS Yevshin, AV Soboleva, AS Kasianov, ...‏
Nucleic acids research 44 (D1), D116-D125, 2016‏
2692016
GTRD: an integrated view of transcription regulation‏
S Kolmykov, I Yevshin, M Kulyashov, R Sharipov, Y Kondrakhin, ...‏
Nucleic Acids Research 49 (D1), D104-D111, 2021‏
2152021
Deep and wide digging for binding motifs in ChIP-Seq data‏
IV Kulakovskiy, VA Boeva, AV Favorov, VJ Makeev‏
Bioinformatics 26 (20), 2622-2623, 2010‏
1882010
Functional annotation of human long noncoding RNAs via molecular phenotyping‏
JA Ramilowski, CW Yip, S Agrawal, JC Chang, Y Ciani, IV Kulakovskiy, ...‏
Genome Research 30 (7), 1060-1072, 2020‏
1572020
Intergenic, gene terminal, and intragenic CpG islands in the human genome‏
Y Medvedeva, M Fridman, N Oparina, D Malko, E Ermakova, ...‏
BMC genomics 11 (1), 48, 2010‏
1152010
Multifaceted deregulation of gene expression and protein synthesis with age‏
AS Anisimova, MB Meerson, MV Gerashchenko, IV Kulakovskiy, ...‏
PNAS 117 (27), 15581-15590, 2020‏
1072020
Jaccard index based similarity measure to compare transcription factor binding site models‏
IE Vorontsov, IV Kulakovskiy, VJ Makeev‏
Algorithms for Molecular Biology 8 (1), 23, 2013‏
932013
Landscape of allele-specific transcription factor binding in the human genome‏
S Abramov, A Boytsov, D Bykova, DD Penzar, I Yevshin, SK Kolmykov, ...‏
Nature Communications 12 (1), 1-15, 2021‏
892021
Architectural proteins Pita, Zw5, and ZIPIC contain homodimerization domain and support specific long-range interactions in Drosophila‏
N Zolotarev, A Fedotova, O Kyrchanova, A Bonchuk, AA Penin, AS Lando, ...‏
Nucleic acids research 44 (15), 7228-7241, 2016‏
822016
From binding motifs in ChIP-seq data to improved models of transcription factor binding sites‏
I KULAKOVSKIY, V LEVITSKY, D OSHCHEPKOV, L BRYZGALOV, ...‏
Journal of Bioinformatics and Computational Biology, 2013‏
822013
Insights gained from a comprehensive all-against-all transcription factor binding motif benchmarking study‏
G Ambrosini, I Vorontsov, D Penzar, R Groux, O Fornes, DD Nikolaeva, ...‏
Genome biology 21, 1-18, 2020‏
652020
Single-Cell Analyses of ESCs Reveal Alternative Pluripotent Cell States and Molecular Mechanisms that Control Self-Renewal‏
D Papatsenko, H Darr, IV Kulakovskiy, A Waghray, VJ Makeev, ...‏
Stem Cell Reports 5 (2), 207-220, 2015‏
592015
Integration of multiple epigenomic marks improves prediction of variant impact in saturation mutagenesis reporter assay‏
D Shigaki, O Adato, AN Adhikari, S Dong, A Hawkins‐Hooker, F Inoue, ...‏
Human mutation 40 (9), 1280-1291, 2019‏
582019
HOCOMOCO in 2024: a rebuild of the curated collection of binding models for human and mouse transcription factors‏
IE Vorontsov, IA Eliseeva, A Zinkevich, M Nikonov, S Abramov, A Boytsov, ...‏
Nucleic Acids Research 52 (D1), D154-D163, 2024‏
532024
CpG traffic lights are markers of regulatory regions in human genome‏
AV Lioznova, AM Khamis, AV Artemov, E Besedina, V Ramensky, ...‏
BMC Genomics 20 (1), 102, 2019‏
492019
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مقاله‌ها 1–20