دنبال کردن
Se Jin Song
Se Jin Song
University of California San Diego
ایمیل تأیید شده در ucsd.edu
عنوان
نقل شده توسط
نقل شده توسط
سال
Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2‏
E Bolyen, JR Rideout, MR Dillon, NA Bokulich, CC Abnet, GA Al-Ghalith, ...‏
Nature biotechnology 37 (8), 852-857, 2019‏
175622019
The treatment-naive microbiome in new-onset Crohn’s disease‏
D Gevers, S Kugathasan, LA Denson, Y Vázquez-Baeza, W Van Treuren, ...‏
Cell host & microbe 15 (3), 382-392, 2014‏
35452014
A communal catalogue reveals Earth’s multiscale microbial diversity‏
LR Thompson, JG Sanders, D McDonald, A Amir, J Ladau, KJ Locey, ...‏
Nature 551 (7681), 457-463, 2017‏
25232017
Cohabiting family members share microbiota with one another and with their dogs‏
SJ Song, C Lauber, EK Costello, CA Lozupone, G Humphrey, ...‏
elife 2, e00458, 2013‏
12852013
Partial restoration of the microbiota of cesarean-born infants via vaginal microbial transfer‏
MG Dominguez-Bello, KM De Jesus-Laboy, N Shen, LM Cox, A Amir, ...‏
Nature medicine 22 (3), 250-253, 2016‏
11212016
QIIME 2: Reproducible, interactive, scalable, and extensible microbiome data science‏
E Bolyen, JR Rideout, MR Dillon, NA Bokulich, C Abnet, GA Al-Ghalith, ...‏
PeerJ Preprints, 2018‏
10372018
The microbiome of uncontacted Amerindians‏
JC Clemente, EC Pehrsson, MJ Blaser, K Sandhu, Z Gao, B Wang, ...‏
Science advances 1 (3), e1500183, 2015‏
9632015
RETRACTED ARTICLE: Microbiome analyses of blood and tissues suggest cancer diagnostic approach‏
GD Poore, E Kopylova, Q Zhu, C Carpenter, S Fraraccio, S Wandro, ...‏
Nature 579 (7800), 567-574, 2020‏
9592020
American gut: an open platform for citizen science microbiome research‏
D McDonald, E Hyde, JW Debelius, JT Morton, A Gonzalez, G Ackermann, ...‏
Msystems 3 (3), 10.1128/msystems. 00031-18, 2018‏
7722018
Advancing our understanding of the human microbiome using QIIME‏
JA Navas-Molina, JM Peralta-Sánchez, A González, PJ McMurdie, ...‏
Methods in enzymology 531, 371-444, 2013‏
6672013
Microbial community assembly and metabolic function during mammalian corpse decomposition‏
JL Metcalf, ZZ Xu, S Weiss, S Lax, W Van Treuren, ER Hyde, SJ Song, ...‏
Science 351 (6269), 158-162, 2016‏
5432016
The human microbiome in evolution‏
ER Davenport, JG Sanders, SJ Song, KR Amato, AG Clark, R Knight‏
BMC biology 15, 1-12, 2017‏
4582017
The effects of captivity on the mammalian gut microbiome‏
VJ McKenzie, SJ Song, F Delsuc, TL Prest, AM Oliverio, TM Korpita, ...‏
Integrative and comparative biology 57 (4), 690-704, 2017‏
4232017
Preservation methods differ in fecal microbiome stability, affecting suitability for field studies‏
SJ Song, A Amir, JL Metcalf, KR Amato, ZZ Xu, G Humphrey, R Knight‏
MSystems 1 (3), 10.1128/msystems. 00021-16, 2016‏
4162016
Convergence of gut microbiomes in myrmecophagous mammals‏
F Delsuc, JL Metcalf, L Wegener Parfrey, SJ Song, A González, R Knight‏
Molecular ecology 23 (6), 1301-1317, 2014‏
3432014
From superspreaders to disease hotspots: linking transmission across hosts and space‏
SH Paull, S Song, KM McClure, LC Sackett, AM Kilpatrick, PTJ Johnson‏
Frontiers in Ecology and the Environment 10 (2), 75-82, 2012‏
3412012
Evolutionary trends in host physiology outweigh dietary niche in structuring primate gut microbiomes‏
KR Amato, JG Sanders, SJ Song, M Nute, JL Metcalf, LR Thompson, ...‏
The ISME journal 13 (3), 576-587, 2019‏
2972019
The bee microbiome: impact on bee health and model for evolution and ecology of host-microbe interactions‏
P Engel, WK Kwong, Q McFrederick, KE Anderson, SM Barribeau, ...‏
MBio 7 (2), 10.1128/mbio. 02164-15, 2016‏
2902016
Comparative analyses of vertebrate gut microbiomes reveal convergence between birds and bats‏
SJ Song, JG Sanders, F Delsuc, J Metcalf, K Amato, MW Taylor, F Mazel, ...‏
MBio 11 (1), 10.1128/mbio. 02901-19, 2020‏
2872020
Learning representations of microbe–metabolite interactions‏
JT Morton, AA Aksenov, LF Nothias, JR Foulds, RA Quinn, MH Badri, ...‏
Nature methods 16 (12), 1306-1314, 2019‏
2702019
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مقاله‌ها 1–20