Molecular mechanism and binding free energy of doxorubicin intercalation in DNA B Jawad, L Poudel, R Podgornik, NF Steinmetz, WY Ching Physical Chemistry Chemical Physics 21 (7), 3877-3893, 2019 | 108 | 2019 |
Implication of the solvent effect, metal ions and topology in the electronic structure and hydrogen bonding of human telomeric G-quadruplex DNA L Poudel, NF Steinmetz, RH French, VA Parsegian, R Podgornik, ... Physical Chemistry Chemical Physics 18 (31), 21573-21585, 2016 | 48 | 2016 |
The hydration effect and selectivity of alkali metal ions on poly (ethylene glycol) models in cyclic and linear topology L Poudel, R Podgornik, WY Ching The Journal of Physical Chemistry A 121 (24), 4721-4731, 2017 | 41 | 2017 |
Impact of hydrogen bonding in the binding site between capsid protein and MS2 bacteriophage ssRNA L Poudel, R Twarock, NF Steinmetz, R Podgornik, WY Ching The Journal of Physical Chemistry B 121 (26), 6321-6330, 2017 | 36 | 2017 |
Electronic structure, stacking energy, partial charge, and hydrogen bonding in four periodic B-DNA models L Poudel, P Rulis, L Liang, WY Ching Physical Review E 90 (2), 022705, 2014 | 35 | 2014 |
Atomic-Scale Quantification of Interfacial Binding Between Peptides and Inorganic Crystals: The Case of Calcium Carbonate Binding Peptide on Aragonite L Poudel, C Tamerler, A Misra, WY Ching The Journal of Physical Chemistry C, 2017 | 34 | 2017 |
Electronic structure and partial charge distribution of doxorubicin in different molecular environments L Poudel, AM Wen, RH French, VA Parsegian, R Podgornik, NF Steinmetz, ... ChemPhysChem 16 (7), 1451-1460, 2015 | 32 | 2015 |
Thermodynamic dissection of the intercalation binding process of doxorubicin to dsDNA with implications of ionic and solvent effects B Jawad, L Poudel, R Podgornik, WY Ching The Journal of Physical Chemistry B 124 (36), 7803-7818, 2020 | 30 | 2020 |
van der Waals interactions on the mesoscale: Open-science implementation, anisotropy, retardation, and solvent effects DM Dryden, JC Hopkins, LK Denoyer, L Poudel, NF Steinmetz, WY Ching, ... Langmuir 31 (37), 10145-10153, 2015 | 27 | 2015 |
Optical properties and electronic transitions of DNA oligonucleotides as a function of composition and stacking sequence JB Schimelman, DM Dryden, L Poudel, KE Krawiec, Y Ma, R Podgornik, ... Physical Chemistry Chemical Physics 17 (6), 4589-4599, 2015 | 25 | 2015 |
Synthesis of monodisperse rod-shaped silica particles through biotemplating of surface-functionalized bacteria H Ping, L Poudel, H Xie, W Fang, Z Zou, P Zhai, W Wagermaier, P Fratzl, ... Nanoscale 12 (16), 8732-8741, 2020 | 12 | 2020 |
Interfacial interaction between suolunite crystal and silica binding peptide for novel bioinspired cement WY Ching, L Poudel, S San, K Baral ACS Combinatorial Science 21 (12), 794-804, 2019 | 11 | 2019 |
Interaction between Capsid Coat Protein and MS2 Bacteriophage SSRNA with Different Loop Motif for Virus Assembly Process L Poudel, WY Ching Biophysical Journal 114 (3), 252a, 2018 | 4 | 2018 |
Mechanisms by which small molecules of diverse chemotypes arrest Sec14 lipid transfer activity XR Chen, L Poudel, Z Hong, P Johnen, S Katti, A Tripathi, AH Nile, ... Journal of Biological Chemistry 299 (2), 102861, 2023 | 3 | 2023 |
Molecular Dynamic and Free Energy Analysis of Doxorubicin and DNA Complex B Jawad, L Poudel, WY Ching Biophysical Journal 114 (3), 528a, 2018 | 3 | 2018 |
Advanced predictive quality assessment for ultrasonic additive manufacturing with deep learning model L Poudel, S Jha, R Meeker, DN Phan, R Bhowmik Journal of Intelligent Manufacturing, 1-15, 2025 | | 2025 |
Scalable AI Framework for Defect Detection in Metal Additive Manufacturing DN Phan, S Jha, JP Mavo, EL Lanigan, L Nguyen, L Poudel, R Bhowmik arXiv preprint arXiv:2411.00960, 2024 | | 2024 |
Mechanisms by Which Small Molecule Inhibitors Arrest Sec14 Phosphatidylinositol Transfer Protein Activity XR Chen, L Poudel, Z Hong, P Johnen, SS Katti, A Tripathi, AH Nile, ... bioRxiv, 2022.08. 01.502361, 2022 | | 2022 |
Mechanism of diacylglycerol sensing revealed by integrative structural biology approach SS Katti, IV Krieger, L Poudel, JS Sacchettini, TI Igumenova Biophysical Journal 121 (3), 224a, 2022 | | 2022 |
Deciphering of Packing Signal Hypothesis in Bacterophage RNA Recognition by the MS2 Capsid Protein in Virus Assembly L Poudel University of Missouri-Kansas City, 2018 | | 2018 |