دنبال کردن
Daniel McDonald
Daniel McDonald
American Gut, Knight Lab, Department of Pediatrics, UCSD
ایمیل تأیید شده در ucsd.edu - صفحهٔ اصلی
عنوان
نقل شده توسط
نقل شده توسط
سال
QIIME allows analysis of high-throughput community sequencing data‏
JG Caporaso, J Kuczynski, J Stombaugh, K Bittinger, FD Bushman, ...‏
Nature methods 7 (5), 335-336, 2010‏
364362010
Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2‏
E Bolyen, JR Rideout, MR Dillon, NA Bokulich, CC Abnet, GA Al-Ghalith, ...‏
Nature biotechnology 37 (8), 852-857, 2019‏
175602019
Structure, function and diversity of the healthy human microbiome‏
nature 486 (7402), 207-214, 2012‏
110072012
Predictive functional profiling of microbial communities using 16S rRNA marker gene sequences‏
MGI Langille, J Zaneveld, JG Caporaso, D McDonald, D Knights, ...‏
Nature biotechnology 31 (9), 814-821, 2013‏
90252013
An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea‏
D McDonald, MN Price, J Goodrich, EP Nawrocki, TZ DeSantis, A Probst, ...‏
The ISME journal 6 (3), 610-618, 2012‏
54672012
The treatment-naive microbiome in new-onset Crohn’s disease‏
D Gevers, S Kugathasan, LA Denson, Y Vázquez-Baeza, W Van Treuren, ...‏
Cell host & microbe 15 (3), 382-392, 2014‏
35452014
A communal catalogue reveals Earth’s multiscale microbial diversity‏
LR Thompson, JG Sanders, D McDonald, A Amir, J Ladau, KJ Locey, ...‏
Nature 551 (7681), 457-463, 2017‏
25232017
A framework for human microbiome research‏
Nature 486 (7402), 215-221, 2012‏
17782012
Best practices for analysing microbiomes‏
R Knight, A Vrbanac, BC Taylor, A Aksenov, C Callewaert, J Debelius, ...‏
Nature Reviews Microbiology 16 (7), 410-422, 2018‏
16862018
Deblur rapidly resolves single-nucleotide community sequence patterns‏
A Amir, D McDonald, JA Navas-Molina, E Kopylova, JT Morton, Z Zech Xu, ...‏
MSystems 2 (2), 10.1128/msystems. 00191-16, 2017‏
15452017
Strains, functions and dynamics in the expanded Human Microbiome Project‏
J Lloyd-Price, A Mahurkar, G Rahnavard, J Crabtree, J Orvis, AB Hall, ...‏
Nature 550 (7674), 61-66, 2017‏
12782017
Dynamics of the human gut microbiome in inflammatory bowel disease‏
J Halfvarson, CJ Brislawn, R Lamendella, Y Vázquez-Baeza, WA Walters, ...‏
Nature microbiology 2 (5), 1-7, 2017‏
11972017
QIIME 2: Reproducible, interactive, scalable, and extensible microbiome data science‏
E Bolyen, JR Rideout, MR Dillon, NA Bokulich, C Abnet, GA Al-Ghalith, ...‏
PeerJ Preprints, 2018‏
10372018
GABA-modulating bacteria of the human gut microbiota‏
P Strandwitz, KH Kim, D Terekhova, JK Liu, A Sharma, J Levering, ...‏
Nature microbiology 4 (3), 396-403, 2019‏
9652019
The Biological Observation Matrix (BIOM) format or: how I learned to stop worrying and love the ome-ome‏
D McDonald, JC Clemente, J Kuczynski, JR Rideout, J Stombaugh, ...‏
Gigascience 1 (1), 2047-217X-1-7, 2012‏
8322012
Regional variation limits applications of healthy gut microbiome reference ranges and disease models‏
Y He, W Wu, HM Zheng, P Li, D McDonald, HF Sheng, MX Chen, ...‏
Nature medicine 24 (10), 1532-1535, 2018‏
8312018
Forensic identification using skin bacterial communities‏
N Fierer, CL Lauber, N Zhou, D McDonald, EK Costello, R Knight‏
Proceedings of the National Academy of Sciences 107 (14), 6477-6481, 2010‏
7992010
American gut: an open platform for citizen science microbiome research‏
D McDonald, E Hyde, JW Debelius, JT Morton, A Gonzalez, G Ackermann, ...‏
Msystems 3 (3), 10.1128/msystems. 00031-18, 2018‏
7722018
Subsampled open-reference clustering creates consistent, comprehensive OTU definitions and scales to billions of sequences‏
JR Rideout, Y He, JA Navas-Molina, WA Walters, LK Ursell, SM Gibbons, ...‏
PeerJ 2, e545, 2014‏
6452014
Qiita: rapid, web-enabled microbiome meta-analysis‏
A Gonzalez, JA Navas-Molina, T Kosciolek, D McDonald, ...‏
Nature methods 15 (10), 796-798, 2018‏
6112018
سیستم در حال حاضر قادر به انجام عملکرد نیست. بعداً دوباره امتحان کنید.
مقاله‌ها 1–20