| Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2 E Bolyen, JR Rideout, MR Dillon, NA Bokulich, CC Abnet, GA Al-Ghalith, ... Nature biotechnology 37 (8), 852-857, 2019 | 17570 | 2019 |
| Optimizing taxonomic classification of marker-gene amplicon sequences with QIIME 2’s q2-feature-classifier plugin NA Bokulich, BD Kaehler, JR Rideout, M Dillon, E Bolyen, R Knight, ... Microbiome 6, 1-17, 2018 | 4637 | 2018 |
| QIIME 2: Reproducible, interactive, scalable, and extensible microbiome data science E Bolyen, JR Rideout, MR Dillon, NA Bokulich, C Abnet, GA Al-Ghalith, ... PeerJ Preprints, 2018 | 1040 | 2018 |
| The Biological Observation Matrix (BIOM) format or: how I learned to stop worrying and love the ome-ome D McDonald, JC Clemente, J Kuczynski, JR Rideout, J Stombaugh, ... Gigascience 1 (1), 2047-217X-1-7, 2012 | 832 | 2012 |
| Subsampled open-reference clustering creates consistent, comprehensive OTU definitions and scales to billions of sequences JR Rideout, Y He, JA Navas-Molina, WA Walters, LK Ursell, SM Gibbons, ... PeerJ 2, e545, 2014 | 645 | 2014 |
| Qiita: rapid, web-enabled microbiome meta-analysis A Gonzalez, JA Navas-Molina, T Kosciolek, D McDonald, ... Nature methods 15 (10), 796-798, 2018 | 611 | 2018 |
| Temporal variability is a personalized feature of the human microbiome GE Flores, JG Caporaso, JB Henley, JR Rideout, D Domogala, J Chase, ... Genome biology 15, 1-13, 2014 | 478 | 2014 |
| The interpersonal and intrapersonal diversity of human-associated microbiota in key body sites LK Ursell, JC Clemente, JR Rideout, D Gevers, JG Caporaso, R Knight Journal of Allergy and Clinical Immunology 129 (5), 1204-1208, 2012 | 412 | 2012 |
| q2-longitudinal: longitudinal and paired-sample analyses of microbiome data NA Bokulich, MR Dillon, Y Zhang, JR Rideout, E Bolyen, H Li, PS Albert, ... MSystems 3 (6), 10.1128/msystems. 00219-18, 2018 | 233 | 2018 |
| QIIME 2: reproducible, interactive, scalable, and extensible microbiome data science. PeerJ E Bolyen, JR Rideout, MR Dillon, NA Bokulich, C Abnet, GA Al-Ghalith, ... Inc 6, e27295v2, 2018 | 207 | 2018 |
| Stability of operational taxonomic units: an important but neglected property for analyzing microbial diversity Y He, JG Caporaso, XT Jiang, HF Sheng, SM Huse, JR Rideout, ... Microbiome 3, 1-10, 2015 | 201 | 2015 |
| The Biological Observation Matrix (BIOM) format or: how I learned to stop worrying and love the ome-ome. Gigascience 1: 7 D McDonald, JC Clemente, J Kuczynski, JR Rideout, J Stombaugh, ... | 146 | 2012 |
| mockrobiota: a public resource for microbiome bioinformatics benchmarking NA Bokulich, JR Rideout, WG Mercurio, A Shiffer, B Wolfe, CF Maurice, ... Msystems 1 (5), 10.1128/msystems. 00062-16, 2016 | 73 | 2016 |
| Ghost-tree: creating hybrid-gene phylogenetic trees for diversity analyses J Fouquier, JR Rideout, E Bolyen, J Chase, A Shiffer, D McDonald, ... Microbiome 4, 1-10, 2016 | 67 | 2016 |
| Gut microbial and short-chain fatty acid profiles in adults with chronic constipation before and after treatment with lubiprostone DW Kang, JK DiBaise, ZE Ilhan, MD Crowell, JR Rideout, JG Caporaso, ... Anaerobe 33, 33-41, 2015 | 65 | 2015 |
| Keemei: cloud-based validation of tabular bioinformatics file formats in Google Sheets JR Rideout, JH Chase, E Bolyen, G Ackermann, A González, R Knight, ... Gigascience 5 (1), s13742-016-0133-6, 2016 | 57 | 2016 |
| Optimizing taxonomic classification of marker gene amplicon sequences NA Bokulich, BD Kaehler, JR Rideout, M Dillon, E Bolyen, R Knight, ... PeerJ Preprints 6, e3208v2, 2018 | 44 | 2018 |
| A standardized, extensible framework for optimizing classification improves marker-gene taxonomic assignments NA Bokulich, JR Rideout, E Kopylova, E Bolyen, J Patnode, Z Ellett, ... PeerJ PrePrints 3, e934v2, 2015 | 36 | 2015 |
| Sunpy: A python package for solar physics S Mumford, N Freij, S Christe, J Ireland, F Mayer, V Hughitt, A Shih, ... Journal of Open Source Software 5 (46), 2020 | 34 | 2020 |
| Domestic canines do not display evidence of gut microbial dysbiosis in the presence of Clostridioides (Clostridium) difficile, despite cellular susceptibility to its toxins NE Stone, AE Nunnally, V Jimenez Jr, EK Cope, JW Sahl, K Sheridan, ... Anaerobe 58, 53-72, 2019 | 27 | 2019 |
J Gregory CaporasoNorthern Arizona Universityایمیل تأیید شده در nau.edu