مقاله‌های دارای تعهدات انتشار عمومی - Jason Papinبیشتر بدانید
جای دیگری دردسترس نیست: یک
Multiscale computational modeling in vascular biology: from molecular mechanisms to tissue-level structure and function
HN Hayenga, BC Thorne, P Yen, JA Papin, SM Peirce, JD Humphrey
Multiscale computer modeling in biomechanics and biomedical engineering, 209-240, 2012
تعهدات: US National Institutes of Health
جای دیگری دردسترس است: ۱۰۵
A community-driven global reconstruction of human metabolism
I Thiele, N Swainston, RMT Fleming, A Hoppe, S Sahoo, MK Aurich, ...
Nature biotechnology 31 (5), 419-425, 2013
تعهدات: US National Institutes of Health, Icelandic Centre for Research, UK …
Applications of genome‐scale metabolic reconstructions
MA Oberhardt, BØ Palsson, JA Papin
Molecular systems biology 5 (1), 320, 2009
تعهدات: US National Institutes of Health
MEMOTE for standardized genome-scale metabolic model testing
C Lieven, ME Beber, BG Olivier, FT Bergmann, M Ataman, P Babaei, ...
Nature biotechnology 38 (3), 272-276, 2020
تعهدات: US Department of Energy, Swiss National Science Foundation, Bill & Melinda …
Genome-Scale Metabolic Network Analysis of the Opportunistic Pathogen Pseudomonas aeruginosa PAO1
MA Oberhardt, J Puchałka, KE Fryer, VAP Martins dos Santos, JA Papin
Journal of bacteriology 190 (8), 2790-2803, 2008
تعهدات: US National Institutes of Health
Integration of expression data in genome-scale metabolic network reconstructions
AS Blazier, JA Papin
Frontiers in physiology 3, 299, 2012
تعهدات: US National Institutes of Health
Genome-Scale Reconstruction and Analysis of the Pseudomonas putida KT2440 Metabolic Network Facilitates Applications in Biotechnology
J Puchałka, MA Oberhardt, M Godinho, A Bielecka, D Regenhardt, ...
PLoS computational biology 4 (10), e1000210, 2008
تعهدات: US National Institutes of Health
Dynamic analysis of integrated signaling, metabolic, and regulatory networks
J Min Lee, EP Gianchandani, JA Eddy, JA Papin
PLoS computational biology 4 (5), e1000086, 2008
تعهدات: US National Institutes of Health
Functional integration of a metabolic network model and expression data without arbitrary thresholding
PA Jensen, JA Papin
Bioinformatics 27 (4), 541-547, 2011
تعهدات: US National Institutes of Health
Multiscale computational models of complex biological systems
J Walpole, JA Papin, SM Peirce
Annual review of biomedical engineering 15 (1), 137-154, 2013
تعهدات: US National Institutes of Health
Reconciled rat and human metabolic networks for comparative toxicogenomics and biomarker predictions
EM Blais, KD Rawls, BV Dougherty, ZI Li, GL Kolling, P Ye, A Wallqvist, ...
Nature communications 8 (1), 14250, 2017
تعهدات: US Department of Defense, US National Institutes of Health
Inference of network dynamics and metabolic interactions in the gut microbiome
SN Steinway, MB Biggs, TP Loughran Jr, JA Papin, R Albert
PLoS computational biology 11 (6), e1004338, 2015
تعهدات: US National Institutes of Health
Reconciliation of genome-scale metabolic reconstructions for comparative systems analysis
MA Oberhardt, J Puchałka, VAP Martins dos Santos, JA Papin
PLoS computational biology 7 (3), e1001116, 2011
تعهدات: US National Institutes of Health
Predicting biological system objectives de novo from internal state measurements
EP Gianchandani, MA Oberhardt, AP Burgard, CD Maranas, JA Papin
BMC bioinformatics 9, 1-13, 2008
تعهدات: US National Institutes of Health
A metabolic network approach for the identification and prioritization of antimicrobial drug targets
AK Chavali, KM D’Auria, EL Hewlett, RD Pearson, JA Papin
Trends in microbiology 20 (3), 113-123, 2012
تعهدات: US National Institutes of Health
TIGER: Toolbox for integrating genome-scale metabolic models, expression data, and transcriptional regulatory networks
PA Jensen, KA Lutz, JA Papin
BMC systems biology 5, 1-12, 2011
تعهدات: US National Institutes of Health
Reconstruction of the metabolic network of Pseudomonas aeruginosa to interrogate virulence factor synthesis
JA Bartell, AS Blazier, P Yen, JC Thøgersen, L Jelsbak, JB Goldberg, ...
Nature communications 8 (1), 14631, 2017
تعهدات: US National Institutes of Health, Villum Foundation
Metabolic network modeling of microbial communities
MB Biggs, GL Medlock, GL Kolling, JA Papin
Wiley Interdisciplinary Reviews: Systems Biology and Medicine 7 (5), 317-334, 2015
تعهدات: US National Institutes of Health
History of antibiotic adaptation influences microbial evolutionary dynamics during subsequent treatment
P Yen, JA Papin
PLoS biology 15 (8), e2001586, 2017
تعهدات: US National Institutes of Health
Inferring metabolic mechanisms of interaction within a defined gut microbiota
GL Medlock, MA Carey, DG McDuffie, MB Mundy, N Giallourou, ...
Cell systems 7 (3), 245-257. e7, 2018
تعهدات: US National Institutes of Health, UK Biotechnology and Biological Sciences …
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