دنبال کردن
Michael Baxa
Michael Baxa
ایمیل تأیید شده در uchicago.edu - صفحهٔ اصلی
عنوان
نقل شده توسط
نقل شده توسط
سال
Loss of conformational entropy in protein folding calculated using realistic ensembles and its implications for NMR-based calculations
MC Baxa, EJ Haddadian, JM Jumper, KF Freed, TR Sosnick
Proceedings of the National Academy of Sciences 111 (43), 15396-15401, 2014
1242014
Benchmarking all-atom simulations using hydrogen exchange
JJ Skinner, W Yu, EK Gichana, MC Baxa, JR Hinshaw, KF Freed, ...
Proceedings of the National Academy of Sciences 111 (45), 15975-15980, 2014
852014
Characterizing the protein folding transition state using ψ analysis
TR Sosnick, BA Krantz, RS Dothager, M Baxa
Chemical reviews 106 (5), 1862-1876, 2006
632006
Perplexing cooperative folding and stability of a low-sequence complexity, polyproline 2 protein lacking a hydrophobic core
ZP Gates, MC Baxa, W Yu, JA Riback, H Li, B Roux, SBH Kent, ...
Proceedings of the National Academy of Sciences 114 (9), 2241-2246, 2017
382017
Quantifying the structural requirements of the folding transition state of protein A and other systems
MC Baxa, KF Freed, TR Sosnick
Journal of molecular biology 381 (5), 1362-1381, 2008
382008
Context and force field dependence of the loss of protein backbone entropy upon folding using realistic denatured and native state ensembles
MC Baxa, EJ Haddadian, AK Jha, KF Freed, TR Sosnick
Journal of the American Chemical Society 134 (38), 15929-15936, 2012
342012
Even with nonnative interactions, the updated folding transition states of the homologs Proteins G & L are extensive and similar
MC Baxa, W Yu, AN Adhikari, L Ge, Z Xia, R Zhou, KF Freed, TR Sosnick
Proceedings of the National Academy of Sciences 112 (27), 8302-8307, 2015
252015
HDX-MS performed on BtuB in E. coli outer membranes delineates the luminal domain’s allostery and unfolding upon B12 and TonB binding
AM Zmyslowski, MC Baxa, IA Gagnon, TR Sosnick
Proceedings of the National Academy of Sciences 119 (20), e2119436119, 2022
232022
Metal binding kinetics of bi-histidine sites used in ψ analysis: Evidence of high-energy protein folding intermediates
GL Bosco, M Baxa, TR Sosnick
Biochemistry 48 (13), 2950-2959, 2009
182009
A “Link‐Psi” strategy using crosslinking indicates that the folding transition state of ubiquitin is not very malleable
AT Shandiz, MC Baxa, TR Sosnick
Protein Science 21 (6), 819-827, 2012
142012
ψ-Constrained Simulations of Protein Folding Transition States: Implications for Calculating ϕ
MC Baxa, KF Freed, TR Sosnick
Journal of molecular biology 386 (4), 920-928, 2009
142009
Prediction and validation of a protein’s free energy surface using hydrogen exchange and (importantly) its denaturant dependence
X Peng, M Baxa, N Faruk, JR Sachleben, S Pintscher, IA Gagnon, ...
Journal of chemical theory and computation 18 (1), 550-561, 2021
132021
Cooperative folding near the downhill limit determined with amino acid resolution by hydrogen exchange
W Yu, MC Baxa, I Gagnon, KF Freed, TR Sosnick
Proceedings of the National Academy of Sciences 113 (17), 4747-4752, 2016
102016
Revealing what gets buried first in protein folding
TR Sosnick, MC Baxa
Proceedings of the National Academy of Sciences 110 (42), 16704-16705, 2013
42013
Temperature-dependent fold-switching mechanism of the circadian clock protein KaiB
N Zhang, D Sood, SC Guo, N Chen, A Antoszewski, T Marianchuk, S Dey, ...
Proceedings of the National Academy of Sciences 121 (51), e2412327121, 2024
22024
How hydrophobicity, side chains, and salt affect the dimensions of disordered proteins
MC Baxa, X Lin, CD Mukinay, S Chakravarthy, JR Sachleben, S Antilla, ...
Protein Science 33 (5), e4986, 2024
22024
Engineered metal-binding sites to probe protein folding transition states: Psi analysis
MC Baxa, TR Sosnick
Protein Folding: Methods and Protocols, 31-63, 2021
22021
Collapse and Protein Folding: Should We Be Surprised that Biothermodynamics Works So Well?
TR Sosnick, MC Baxa
Annual Review of Biophysics 54, 2025
12025
BPS2025-Effects of hydrophobic sequence patterns on the disordered conformational ensembles of foldable proteins
CD Mukinay, MC Baxa, TR Sosnick, PL Clark
Biophysical Journal 124 (3), 235a-236a, 2025
2025
BPS2025-Exploring the folding pathways of pertactin using enhanced sampling techniques
L Yang, M Baxa, JC Gumbart
Biophysical Journal 124 (3), 387a, 2025
2025
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مقاله‌ها 1–20