| Predicting the Functional Effect of Amino Acid Substitutions and Indels Y Choi, GE Sims, S Murphy, JR Miller, AP Chan PloS one 7 (10), e46688, 2012 | 3238 | 2012 |
| PROVEAN web server: a tool to predict the functional effect of amino acid substitutions and indels Y Choi, AP Chan Bioinformatics 31 (16), 2745-2747, 2015 | 2590 | 2015 |
| A fast computation of pairwise sequence alignment scores between a protein and a set of single-locus variants of another protein Y Choi Proceedings of the ACM Conference on Bioinformatics, Computational Biology …, 2012 | 187 | 2012 |
| Comparison of phasing strategies for whole human genomes Y Choi, AP Chan, E Kirkness, A Telenti, NJ Schork PLoS genetics 14 (4), e1007308, 2018 | 184 | 2018 |
| Compression of graphical structures: Fundamental limits, algorithms, and experiments Y Choi, W Szpankowski IEEE Transactions on Information Theory 58 (2), 620-638, 2012 | 141 | 2012 |
| Compression of graphical structures Y Choi, W Szpankowski IEEE International Symposium on Information Theory, 364-368, 2009 | 141* | 2009 |
| A novel method of consensus pan-chromosome assembly and large-scale comparative analysis reveal the highly flexible pan-genome of Acinetobacter baumannii AP Chan, G Sutton, J DePew, R Krishnakumar, Y Choi, XZ Huang, E Beck, ... Genome biology 16, 1-28, 2015 | 127 | 2015 |
| Mechanism-of-action classification of antibiotics by global transcriptome profiling A O’Rourke, S Beyhan, Y Choi, P Morales, AP Chan, JL Espinoza, ... Antimicrobial agents and chemotherapy 64 (3), 10.1128/aac. 01207-19, 2020 | 111 | 2020 |
| Electrochemical detection of Pseudomonas in wound exudate samples from patients with chronic wounds HJ Sismaet, A Banerjee, S McNish, Y Choi, M Torralba, S Lucas, A Chan, ... Wound Repair and Regeneration 24 (2), 366-372, 2016 | 65 | 2016 |
| Co-occurrence of anaerobes in human chronic wounds Y Choi, A Banerjee, S McNish, KS Couch, MG Torralba, S Lucas, ... Microbial ecology 77, 808-820, 2019 | 62 | 2019 |
| Comparative transcriptomics reveals circadian and pluripotency networks as two pillars of longevity regulation JY Lu, M Simon, Y Zhao, J Ablaeva, N Corson, Y Choi, KLYH Yamada, ... Cell Metabolism 34 (6), 836-856. e5, 2022 | 54 | 2022 |
| Conserved genomic terminals of SARS-CoV-2 as coevolving functional elements and potential therapeutic targets AP Chan, Y Choi, NJ Schork MSphere 5 (6), 10.1128/msphere. 00754-20, 2020 | 50 | 2020 |
| Dominance and Sexual Dimorphism Pervade the Salix purpurea L. Transcriptome CH Carlson, Y Choi, AP Chan, MJ Serapiglia, CD Town, LB Smart Genome biology and evolution 9 (9), 2377-2394, 2017 | 36 | 2017 |
| Energy-optimal distributed algorithms for minimum spanning trees Y Choi, M Khan, VSA Kumar, G Pandurangan Proceedings of the twentieth annual symposium on Parallelism in algorithms …, 2008 | 36 | 2008 |
| Predicting antimicrobial mechanism-of-action from transcriptomes: A generalizable explainable artificial intelligence approach JL Espinoza, CL Dupont, A O’Rourke, S Beyhan, P Morales, A Spoering, ... PLOS Computational Biology 17 (3), e1008857, 2021 | 31 | 2021 |
| A maize database resource that captures tissue-specific and subcellular-localized gene expression, via fluorescent tags and confocal imaging (Maize Cell Genomics Database) V Krishnakumar, Y Choi, E Beck, Q Wu, A Luo, A Sylvester, D Jackson, ... Plant and Cell Physiology 56 (1), e12-e12, 2015 | 30 | 2015 |
| Multidrug resistant pathogens respond differently to the presence of co-pathogen, commensal, probiotic and host cells AP Chan, Y Choi, LM Brinkac, R Krishnakumar, J DePew, M Kim, ... Scientific Reports 8 (1), 8656, 2018 | 27 | 2018 |
| AbGRI4, a novel antibiotic resistance island in multiply antibiotic-resistant Acinetobacter baumannii clinical isolates AP Chan, Y Choi, TH Clarke, LM Brinkac, RC White, MR Jacobs, ... Journal of Antimicrobial Chemotherapy 75 (10), 2760-2768, 2020 | 22 | 2020 |
| Pattern matching in constrained sequences Y Choi, W Szpankowski 2007 IEEE International Symposium on Information Theory, 2606-2610, 2007 | 12 | 2007 |
| A CRISPR-enhanced metagenomic NGS test to improve pandemic preparedness AP Chan, A Siddique, Y Desplat, Y Choi, S Ranganathan, KS Choudhary, ... Cell Reports Methods 3 (5), 2023 | 8 | 2023 |
Jason Rafe MillerAssociate Professor of Computer Science, Hood Collegeایمیل تأیید شده در hood.edu