Dynamic DFS in Undirected Graphs: Breaking the Barrier S Baswana, SR Chaudhury, K Choudhary, S Khan
SIAM Journal on Computing 48 (4), 1335-1363, 2019
56 2019 Simple dynamic algorithms for maximal independent set, maximum flow and maximum matching M Gupta, S Khan
Symposium on Simplicity in Algorithms (SOSA), 86-91, 2021
44 * 2021 Multiple source dual fault tolerant BFS trees M Gupta, S Khan
arXiv preprint arXiv:1704.06907, 2017
35 2017 Matchtigs: minimum plain text representation of k -mer sets S Schmidt, S Khan, JN Alanko, GE Pibiri, AI Tomescu
Genome Biology 24 (1), 136, 2023
17 2023 Safety and completeness in flow decompositions for RNA assembly S Khan, M Kortelainen, M Cáceres, L Williams, AI Tomescu
International Conference on Research in Computational Molecular Biology, 177-192, 2022
16 2022 Dynamic matching algorithms in practice M Henzinger, S Khan, R Paul, C Schulz
arXiv preprint arXiv:2004.09099, 2020
14 2020 Incremental algorithm for maintaining a DFS tree for undirected graphs S Baswana, S Khan
Algorithmica 79 (2), 466-483, 2017
14 2017 The hydrostructure: a universal framework for safe and complete algorithms for genome assembly M Cairo, S Khan, R Rizzi, S Schmidt, AI Tomescu, EC Zirondelli
arXiv preprint arXiv:2011.12635, 2020
13 2020 Near optimal parallel algorithms for dynamic DFS in undirected graphs S Khan
ACM Transactions on Parallel Computing (TOPC) 6 (3), 1-33, 2019
13 2019 Depth first search in the semi-streaming model S Khan, SK Mehta
arXiv preprint arXiv:1901.03689, 2019
12 2019 Incremental DFS algorithms: a theoretical and experimental study S Baswana, A Goel, S Khan
Proceedings of the Twenty-Ninth Annual ACM-SIAM Symposium on Discrete …, 2018
11 2018 Width helps and hinders splitting flows M Cáceres, M Cairo, A Grigorjew, S Khan, B Mumey, R Rizzi, AI Tomescu, ...
ACM Transactions on Algorithms 20 (2), 1-20, 2024
9 2024 Cut paths and their remainder structure, with applications M Cairo, S Khan, R Rizzi, S Schmidt, AI Tomescu, EC Zirondelli
arXiv preprint arXiv:2210.07530, 2022
8 2022 Optimal construction of hierarchical overlap graphs S Khan
arXiv preprint arXiv:2102.02873, 2021
7 2021 Improving RNA assembly via safety and completeness in flow decompositions S Khan, M Kortelainen, M Cáceres, L Williams, AI Tomescu
Journal of Computational Biology 29 (12), 1270-1287, 2022
6 2022 A simplified algorithm computing all st bridges and articulation points M Cairo, S Khan, R Rizzi, S Schmidt, AI Tomescu, EC Zirondelli
Discrete Applied Mathematics 305, 103-108, 2021
5 2021 Safety in s -t Paths, Trails and Walks M Cairo, S Khan, R Rizzi, S Schmidt, AI Tomescu
Algorithmica 84 (3), 719-741, 2022
3 2022 Optimizing safe flow decompositions in DAGs S Khan, AI Tomescu
arXiv preprint arXiv:2102.06480, 2021
3 2021 Genome assembly, a universal theoretical framework: unifying and generalizing the safe and complete algorithms M Cairo, S Khan, R Rizzi, S Schmidt, AI Tomescu, EC Zirondelli
arXiv preprint arXiv:2011.12635, 2020
3 2020 Safety of flow decompositions in dags S Khan, AI Tomescu
ArXiv, 2021
2 2021