| A brassinosteroid transcriptional network revealed by genome‐wide identification of BESI target genes in Arabidopsis thaliana X Yu, L Li, J Zola, M Aluru, H Ye, A Foudree, H Guo, S Anderson, S Aluru, ... The Plant Journal 65 (4), 634-646, 2011 | 706 | 2011 |
| Large-scale maximum likelihood-based phylogenetic analysis on the IBM BlueGene/L M Ott, J Zola, A Stamatakis, S Aluru SC'07: Proceedings of the 2007 ACM/IEEE Conference on Supercomputing, 1-11, 2007 | 166 | 2007 |
| Chloroplast photooxidation-induced transcriptome reprogramming in Arabidopsis immutans white leaf sectors MR Aluru, J Zola, A Foudree, SR Rodermel Plant Physiology 150 (2), 904-923, 2009 | 105 | 2009 |
| PARALLEL-TCOFFEE: A parallel multiple sequence aligner. J Zola, X Yang, A Rospondek, S Aluru ISCA PDCS 2007, 248-253, 2007 | 59 | 2007 |
| Automated, high throughput exploration of process–structure–property relationships using the mapreduce paradigm O Wodo, J Zola, BSS Pokuri, P Du, B Ganapathysubramanian Materials Discovery 1, 21-28, 2015 | 49 | 2015 |
| Parallel information-theory-based construction of genome-wide gene regulatory networks J Zola, M Aluru, A Sarje, S Aluru IEEE Transactions on Parallel and Distributed Systems 21 (12), 1721-1733, 2010 | 45 | 2010 |
| Reverse engineering and analysis of large genome-scale gene networks M Aluru, J Zola, D Nettleton, S Aluru Nucleic acids research 41 (1), e24-e24, 2013 | 40 | 2013 |
| Longitudinal K-means approaches to clustering and analyzing EHR opioid use trajectories for clinical subtypes S Mullin, J Zola, R Lee, J Hu, B MacKenzie, A Brickman, G Anaya, ... Journal of Biomedical Informatics 122, 103889, 2021 | 37 | 2021 |
| Parallel metagenomic sequence clustering via sketching and maximal quasi-clique enumeration on map-reduce clouds X Yang, J Zola, S Aluru 2011 IEEE International Parallel & Distributed Processing Symposium, 1223-1233, 2011 | 36 | 2011 |
| GreenABR: energy-aware adaptive bitrate streaming with deep reinforcement learning BO Turkkan, T Dai, A Raman, T Kosar, C Chen, MF Bulut, J Zola, D Sow Proceedings of the 13th ACM Multimedia Systems Conference, 150-163, 2022 | 35 | 2022 |
| Nucleosome positioning and composition modulate in silico chromatin flexibility N Clauvelin, P Lo, OI Kulaeva, EV Nizovtseva, J Diaz-Montes, J Zola, ... Journal of Physics: Condensed Matter 27 (6), 064112, 2015 | 35 | 2015 |
| Microstructure design using graphs P Du, A Zebrowski, J Zola, B Ganapathysubramanian, O Wodo npj Computational Materials 4 (1), 50, 2018 | 25 | 2018 |
| Parallel globally optimal structure learning of Bayesian networks O Nikolova, J Zola, S Aluru Journal of Parallel and Distributed Computing 73 (8), 1039-1048, 2013 | 24 | 2013 |
| Large-scale phylogenetic analysis on current HPC architectures M Ott, J Zola, S Aluru, AD Johnson, D Janies, A Stamatakis Scientific Programming 16 (2), 255-270, 2008 | 22 | 2008 |
| Parallel information theory based construction of gene regulatory networks J Zola, M Aluru, S Aluru International Conference on High-Performance Computing, 336-349, 2008 | 18 | 2008 |
| Error metrics for learning reliable manifolds from streaming data F Schoeneman, S Mahapatra, V Chandola, N Napp, J Zola Proceedings of the 2017 SIAM International Conference on Data Mining, 750-758, 2017 | 17 | 2017 |
| Federated Computing for the Masses--Aggregating Resources to Tackle Large-Scale Engineering Problems J Diaz-Montes, Y Xie, I Rodero, J Zola, B Ganapathysubramanian, ... Computing in Science & Engineering 16 (4), 62-72, 2014 | 17 | 2014 |
| Parallel Framework for Dimensionality Reduction of Large‐Scale Datasets SK Samudrala, J Zola, S Aluru, B Ganapathysubramanian Scientific Programming 2015 (1), 180214, 2015 | 16 | 2015 |
| A parallel algorithm for exact Bayesian network inference O Nikolova, J Zola, S Aluru 2009 International Conference on High Performance Computing (HiPC), 342-349, 2009 | 15 | 2009 |
| Parallel multiple sequence alignment with local phylogeny search by simulated annealing J Zola, D Trystram, A Tchernykh, C Brizuela Proceedings 20th IEEE International Parallel & Distributed Processing …, 2006 | 15 | 2006 |
