| Integration strategies of multi-omics data for machine learning analysis M Picard, MP Scott-Boyer, A Bodein, O Périn, A Droit Computational and Structural Biotechnology Journal 19, 3735-3746, 2021 | 383 | 2021 |
| A generic multivariate framework for the integration of microbiome longitudinal studies with other data types A Bodein, O Chapleur, A Droit, KA Lê Cao Frontiers in genetics 10, 963, 2019 | 54 | 2019 |
| Interpretation of network-based integration from multi-omics longitudinal data A Bodein, MP Scott-Boyer, O Perin, KA Lê Cao, A Droit Nucleic acids research 50 (5), e27-e27, 2022 | 49 | 2022 |
| The interaction of secreted phospholipase A2-IIA with the microbiota alters its lipidome and promotes inflammation E Doré, C Joly-Beauparlant, S Morozumi, A Mathieu, T Lévesque, ... JCI insight 7 (2), e152638, 2022 | 36 | 2022 |
| timeOmics: an R package for longitudinal multi-omics data integration A Bodein, MP Scott-Boyer, O Perin, KA Lê Cao, A Droit Bioinformatics 38 (2), 577-579, 2022 | 30 | 2022 |
| Adipose tissue transcriptome is related to pollutant exposure in polar bear mother–cub pairs from Svalbard, Norway PM Herst, J Aars, C Joly Beauparlant, A Bodein, M Dalvai, D Gagne, ... Environmental Science & Technology 54 (18), 11365-11375, 2020 | 13 | 2020 |
| Overview of methods for characterization and visualization of a protein–protein interaction network in a multi-omics integration context V Robin, A Bodein, MP Scott-Boyer, M Leclercq, O Périn, A Droit Frontiers in Molecular Biosciences 9, 962799, 2022 | 10 | 2022 |
| High dairy products intake modifies the correlation between α-tocopherol levels and serum proteins related to lipid metabolism in subjects at risk of type 2 diabetes A Mahdavi, M Leclercq, A Bodein, C Gotti, K Greffard, JF Bilodeau, A Droit, ... Journal of Functional Foods 100, 105375, 2023 | 5 | 2023 |
| Target repositioning using multi-layer networks and machine learning: The case of prostate cancer M Picard, MP Scott-Boyer, A Bodein, M Leclercq, J Prunier, O Périn, ... Computational and Structural Biotechnology Journal 24, 464-475, 2024 | 2 | 2024 |
| SOS genes are rapidly induced while translesion synthesis polymerase activity is temporally regulated OET Bergum, AH Singleton, LM Røst, A Bodein, MP Scott-Boyer, MB Rye, ... Frontiers in Microbiology 15, 1373344, 2024 | 2 | 2024 |
| Multi-omics data integration reveals key variables contributing to subgingival microbiome dysbiosis-induced inflammatory response in a hyperglycemic microenvironment S Lafleur, A Bodein, J Mbuya Malaïka Mutombo, A Mathieu, ... International Journal of Molecular Sciences 24 (10), 8832, 2023 | 2 | 2023 |
| Combined transcriptomics and proteomics unveil the impact of vitamin C in modulating specific protein abundance in the mouse liver L Aumailley, A Bodein, P Adjibade, M Leclercq, S Bourassa, A Droit, ... Biological Research 57, 2024 | 1 | 2024 |
| Improving drug repositioning with negative data labeling using large language models M Picard, M Leclercq, A Bodein, MP Scott-Boyer, O Perin, A Droit Journal of Cheminformatics 17 (1), 16, 2025 | | 2025 |
| Proteomic Profiling of Samples Derived from a Murine Model Following Cryptococcus neoformans Infection B Muselius, A Bodein, F Roux-Dalvai, A Droit, J Geddes-McAlister Cryptococcus neoformans: Methods and Protocols, 127-137, 2024 | | 2024 |
| Decoding the Microbiome-Metabolome Nexus: A Systematic Benchmark of Integrative Strategies L Mangnier, A Bodein, M Mariaz, MP Scott-Boyer, A Mathieu, N Vashist, ... bioRxiv, 2024.01. 26.577441, 2024 | | 2024 |
| Comprehensive benchmark of integrative strategies for analyzing microbiome-metabolome relationships L Mangnier, M Mariaz, N Vashist, A Mathieu, A Bodein, M Scott-Boyer, ... | | 2024 |
| Mise en place d'approches bioinformatiques innovantes pour l'intégration de données multi-omiques longitudinales A Bodein | | 2021 |
