Net charge per residue modulates conformational ensembles of intrinsically disordered proteins AH Mao, SL Crick, A Vitalis, CL Chicoine, RV Pappu Proceedings of the National Academy of Sciences 107 (18), 8183-8188, 2010 | 611 | 2010 |
ABSINTH: a new continuum solvation model for simulations of polypeptides in aqueous solutions A Vitalis, RV Pappu Journal of computational chemistry 30 (5), 673-699, 2009 | 352 | 2009 |
PELE: protein energy landscape exploration. A novel Monte Carlo based technique KW Borrelli, A Vitalis, R Alcantara, V Guallar Journal of chemical theory and computation 1 (6), 1304-1311, 2005 | 262 | 2005 |
A polymer physics perspective on driving forces and mechanisms for protein aggregation RV Pappu, X Wang, A Vitalis, SL Crick Archives of biochemistry and biophysics 469 (1), 132-141, 2008 | 184 | 2008 |
Quantitative characterization of intrinsic disorder in polyglutamine: insights from analysis based on polymer theories A Vitalis, X Wang, RV Pappu Biophysical journal 93 (6), 1923-1937, 2007 | 174 | 2007 |
Methods for Monte Carlo simulations of biomacromolecules A Vitalis, RV Pappu Annual reports in computational chemistry 5, 49-76, 2009 | 168 | 2009 |
Characterizing the conformational ensemble of monomeric polyglutamine X Wang, A Vitalis, MA Wyczalkowski, RV Pappu Proteins: Structure, Function, and Bioinformatics 63 (2), 297-311, 2006 | 159 | 2006 |
Modulation of polyglutamine conformations and dimer formation by the N-terminus of huntingtin TE Williamson, A Vitalis, SL Crick, RV Pappu Journal of molecular biology 396 (5), 1295-1309, 2010 | 150 | 2010 |
Atomistic simulations of the effects of polyglutamine chain length and solvent quality on conformational equilibria and spontaneous homodimerization A Vitalis, X Wang, RV Pappu Journal of molecular biology 384 (1), 279-297, 2008 | 146 | 2008 |
Quantitative assessments of the distinct contributions of polypeptide backbone amides versus side chain groups to chain expansion via chemical denaturation AS Holehouse, K Garai, N Lyle, A Vitalis, RV Pappu Journal of the American Chemical Society 137 (8), 2984-2995, 2015 | 115 | 2015 |
Assessing the contribution of heterogeneous distributions of oligomers to aggregation mechanisms of polyglutamine peptides A Vitalis, RV Pappu Biophysical chemistry 159 (1), 14-23, 2011 | 111 | 2011 |
Dynamic microfluidic control of supramolecular peptide self-assembly ZA Arnon, A Vitalis, A Levin, TCT Michaels, A Caflisch, TPJ Knowles, ... Nature communications 7 (1), 13190, 2016 | 106 | 2016 |
Thermodynamics of β-sheet formation in polyglutamine A Vitalis, N Lyle, RV Pappu Biophysical Journal 97 (1), 303-311, 2009 | 104 | 2009 |
Micelle-like architecture of the monomer ensemble of Alzheimer’s amyloid-β peptide in aqueous solution and its implications for Aβ aggregation A Vitalis, A Caflisch Journal of molecular biology 403 (1), 148-165, 2010 | 88 | 2010 |
Efficient construction of mesostate networks from molecular dynamics trajectories A Vitalis, A Caflisch Journal of chemical theory and computation 8 (3), 1108-1120, 2012 | 54 | 2012 |
Disordered binding of small molecules to Aβ (12–28) M Convertino, A Vitalis, A Caflisch Journal of Biological Chemistry 286 (48), 41578-41588, 2011 | 50 | 2011 |
Improved Atomistic Monte Carlo Simulations Demonstrate That Poly-l-Proline Adopts Heterogeneous Ensembles of Conformations of Semi-Rigid Segments … A Radhakrishnan, A Vitalis, AH Mao, AT Steffen, RV Pappu The journal of physical chemistry B 116 (23), 6862-6871, 2012 | 44 | 2012 |
Amyloid β fibril elongation by monomers involves disorder at the tip M Bacci, J Vymětal, M Mihajlovic, A Caflisch, A Vitalis Journal of chemical theory and computation 13 (10), 5117-5130, 2017 | 38 | 2017 |
A molecular simulation protocol to avoid sampling redundancy and discover new states M Bacci, A Vitalis, A Caflisch Biochimica et Biophysica Acta (BBA)-General Subjects 1850 (5), 889-902, 2015 | 33 | 2015 |
A scalable algorithm to order and annotate continuous observations reveals the metastable states visited by dynamical systems N Blöchliger, A Vitalis, A Caflisch Computer Physics Communications 184 (11), 2446-2453, 2013 | 33 | 2013 |