| The HADDOCK2. 2 web server: user-friendly integrative modeling of biomolecular complexes GCP Van Zundert, J Rodrigues, M Trellet, C Schmitz, PL Kastritis, ... Journal of molecular biology 428 (4), 720-725, 2016 | 2695 | 2016 |
| Prediction of homoprotein and heteroprotein complexes by protein docking and template‐based modeling: a CASP‐CAPRI experiment MF Lensink, S Velankar, A Kryshtafovych, SY Huang, ... Proteins: Structure, Function, and Bioinformatics 84, 323-348, 2016 | 168 | 2016 |
| Probing a cell-embedded megadalton protein complex by DNP-supported solid-state NMR M Kaplan, A Cukkemane, GCP Van Zundert, S Narasimhan, M Daniëls, ... Nature methods 12 (7), 649-652, 2015 | 162 | 2015 |
| Synthetic group A streptogramin antibiotics that overcome Vat resistance Q Li, J Pellegrino, DJ Lee, AA Tran, HA Chaires, R Wang, JE Park, K Ji, ... Nature 586 (7827), 145-150, 2020 | 87 | 2020 |
| Integrative modeling of biomolecular complexes: HADDOCKing with cryo-electron microscopy data GCP van Zundert, ASJ Melquiond, AMJJ Bonvin Structure 23 (5), 949-960, 2015 | 79 | 2015 |
| DisVis: quantifying and visualizing accessible interaction space of distance-restrained biomolecular complexes GCP Van Zundert, AMJJ Bonvin Bioinformatics 31 (19), 3222-3224, 2015 | 78 | 2015 |
| Defining the limits of homology modeling in information‐driven protein docking J Rodrigues, ASJ Melquiond, E Karaca, M Trellet, M Van Dijk, ... Proteins: Structure, Function, and Bioinformatics 81 (12), 2119-2128, 2013 | 78 | 2013 |
| Modeling protein–protein complexes using the HADDOCK webserver “modeling protein complexes with HADDOCK” GCP van Zundert, AMJJ Bonvin Protein structure prediction, 163-179, 2014 | 73 | 2014 |
| Sense and simplicity in HADDOCK scoring: Lessons from CASP‐CAPRI round 1 A Vangone, J Rodrigues, LC Xue, GCP Van Zundert, C Geng, ... Proteins: Structure, Function, and Bioinformatics 85 (3), 417-423, 2017 | 63 | 2017 |
| GemSpot: a pipeline for robust modeling of ligands into cryo-EM maps MJ Robertson, GCP van Zundert, K Borrelli, G Skiniotis Structure 28 (6), 707-716. e3, 2020 | 62 | 2020 |
| The HADDOCK2. 4 web server for integrative modeling of biomolecular complexes RV Honorato, ME Trellet, B Jiménez-García, JJ Schaarschmidt, M Giulini, ... Nature Protocols, 1-23, 2024 | 57 | 2024 |
| The DisVis and PowerFit web servers: explorative and integrative modeling of biomolecular complexes GCP Van Zundert, M Trellet, J Schaarschmidt, Z Kurkcuoglu, M David, ... Journal of molecular biology 429 (3), 399-407, 2017 | 57 | 2017 |
| qFit-ligand Reveals Widespread Conformational Heterogeneity of Drug-Like Molecules in X-Ray Electron Density Maps GCP van Zundert, BM Hudson, SHP de Oliveira, DA Keedy, R Fonseca, ... Journal of Medicinal Chemistry 61 (24), 11183-11198, 2018 | 55 | 2018 |
| Fast and sensitive rigid-body fitting into cryo-EM density maps with PowerFit G Cp van Zundert, A Mjj Bonvin AIMS Biophysics 2 (2), 73-87, 2015 | 52 | 2015 |
| IR Spectroscopy of Isolated Neutral and Protonated Adenine and 9‐Methyladenine GCP Van Zundert, S Jaeqx, G Berden, JM Bakker, K Kleinermanns, ... ChemPhysChem 12 (10), 1921-1927, 2011 | 52 | 2011 |
| Macromolecular refinement of X-ray and cryoelectron microscopy structures with Phenix/OPLS3e for improved structure and ligand quality GCP van Zundert, NW Moriarty, OV Sobolev, PD Adams, KW Borrelli Structure 29 (8), 913-921. e4, 2021 | 46 | 2021 |
| qFit 3: Protein and ligand multiconformer modeling for X‐ray crystallographic and single‐particle cryo‐EM density maps BT Riley, SA Wankowicz, SHP de Oliveira, GCP van Zundert, DW Hogan, ... Protein Science 30 (1), 270-285, 2021 | 45 | 2021 |
| Structural basis for recognition of N-formyl peptides as pathogen-associated molecular patterns G Chen, X Wang, Q Liao, Y Ge, H Jiao, Q Chen, Y Liu, W Lyu, L Zhu, ... Nature communications 13 (1), 5232, 2022 | 35 | 2022 |
| Structural basis for isoform-specific inhibition of human CTPS1 EM Lynch, MA DiMattia, S Albanese, GCP van Zundert, JM Hansen, ... Proceedings of the National Academy of Sciences 118 (40), e2107968118, 2021 | 35 | 2021 |
| Structural basis of GM-CSF and IL-2 sequestration by the viral decoy receptor GIF J Felix, E Kandiah, S De Munck, Y Bloch, GC Van Zundert, K Pauwels, ... Nature Communications 7 (1), 13228, 2016 | 23 | 2016 |