Artikkelit, joihin on yleisen käytön mandaatti - Jie RenLisätietoja
Saatavilla jossain: 29
VirFinder: a novel k-mer based tool for identifying viral sequences from assembled metagenomic data
J Ren, NA Ahlgren, YY Lu, JA Fuhrman, F Sun
Microbiome 5, 1-20, 2017
Mandaatit: US National Science Foundation, US National Institutes of Health, Gordon and …
Identifying viruses from metagenomic data using deep learning
J Ren, K Song, C Deng, NA Ahlgren, JA Fuhrman, Y Li, X Xie, R Poplin, ...
Quantitative Biology 8 (1), 64-77, 2020
Mandaatit: US National Science Foundation, US National Institutes of Health, National …
Alignment-free oligonucleotide frequency dissimilarity measure improves prediction of hosts from metagenomically-derived viral sequences
NA Ahlgren, J Ren, YY Lu, JA Fuhrman, F Sun
Nucleic acids research 45 (1), 39-53, 2017
Mandaatit: US National Science Foundation, US National Institutes of Health
New developments of alignment-free sequence comparison: measures, statistics and next-generation sequencing
K Song, J Ren, G Reinert, M Deng, MS Waterman, F Sun
Briefings in bioinformatics 15 (3), 343-353, 2014
Mandaatit: US National Institutes of Health, National Natural Science Foundation of …
A network-based integrated framework for predicting virus–prokaryote interactions
W Wang, J Ren, K Tang, E Dart, JC Ignacio-Espinoza, JA Fuhrman, ...
NAR genomics and bioinformatics 2 (2), lqaa044, 2020
Mandaatit: US National Science Foundation, US National Institutes of Health, Gordon and …
Alignment-free sequence analysis and applications
J Ren, X Bai, YY Lu, K Tang, Y Wang, G Reinert, F Sun
Annual Review of Biomedical Data Science 1 (1), 93-114, 2018
Mandaatit: US National Science Foundation, US National Institutes of Health, National …
Alignment-free sequence comparison based on next-generation sequencing reads
K Song, J Ren, Z Zhai, X Liu, M Deng, F Sun
Journal of computational biology 20 (2), 64-79, 2013
Mandaatit: US National Institutes of Health
Gut microbial and metabolomic profiles after fecal microbiota transplantation in pediatric ulcerative colitis patients
DJ Nusbaum, F Sun, J Ren, Z Zhu, N Ramsy, N Pervolarakis, S Kunde, ...
FEMS microbiology ecology 94 (9), fiy133, 2018
Mandaatit: US National Institutes of Health
Comparison of metagenomic samples using sequence signatures
B Jiang, K Song, J Ren, M Deng, F Sun, X Zhang
BMC genomics 13, 1-17, 2012
Mandaatit: US National Institutes of Health
CAFE: aCcelerated Alignment-FrEe sequence analysis
YY Lu, K Tang, J Ren, JA Fuhrman, MS Waterman, F Sun
Nucleic acids research 45 (W1), W554-W559, 2017
Mandaatit: US National Science Foundation, US National Institutes of Health, Gordon and …
Prediction of virus-host infectious association by supervised learning methods
M Zhang, L Yang, J Ren, NA Ahlgren, JA Fuhrman, F Sun
BMC bioinformatics 18, 143-154, 2017
Mandaatit: US National Science Foundation, National Natural Science Foundation of China
MicroPro: using metagenomic unmapped reads to provide insights into human microbiota and disease associations
Z Zhu, J Ren, S Michail, F Sun
Genome biology 20, 1-13, 2019
Mandaatit: US National Science Foundation, US National Institutes of Health
Improving zero-shot generalization and robustness of multi-modal models
Y Ge, J Ren, A Gallagher, Y Wang, MH Yang, H Adam, L Itti, ...
Proceedings of the IEEE/CVF conference on computer vision and pattern …, 2023
Mandaatit: US Department of Defense
Inference of Markovian properties of molecular sequences from NGS data and applications to comparative genomics
J Ren, K Song, M Deng, G Reinert, CH Cannon, F Sun
Bioinformatics 32 (7), 993-1000, 2016
Mandaatit: US National Science Foundation, US National Institutes of Health, National …
Alignment-free transcriptomic and metatranscriptomic comparison using sequencing signatures with variable length Markov chains
W Liao, J Ren, K Wang, S Wang, F Zeng, Y Wang, F Sun
Scientific reports 6 (1), 37243, 2016
Mandaatit: US National Science Foundation, National Natural Science Foundation of China
Afann: bias adjustment for alignment-free sequence comparison based on sequencing data using neural network regression
K Tang, J Ren, F Sun
Genome biology 20, 1-17, 2019
Mandaatit: US National Science Foundation, US National Institutes of Health
Identifying Group-Specific Sequences for Microbial Communities Using Long k-mer Sequence Signatures
Y Wang, L Fu, J Ren, Z Yu, T Chen, F Sun
Frontiers in microbiology 9, 872, 2018
Mandaatit: US National Science Foundation, US National Institutes of Health, National …
Rapid diagnosis and comprehensive bacteria profiling of sepsis based on cell-free DNA
P Chen, S Li, W Li, J Ren, F Sun, R Liu, XJ Zhou
Journal of Translational Medicine 18, 1-10, 2020
Mandaatit: US National Institutes of Health, National Natural Science Foundation of China
Reads binning improves alignment-free metagenome comparison
K Song, J Ren, F Sun
Frontiers in Genetics 10, 1156, 2019
Mandaatit: US National Science Foundation, US National Institutes of Health, National …
Multiple alignment-free sequence comparison
J Ren, K Song, F Sun, M Deng, G Reinert
Bioinformatics 29 (21), 2690-2698, 2013
Mandaatit: US National Institutes of Health, UK Engineering and Physical Sciences …
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