| Profiling mouse brown and white adipocytes to identify metabolically relevant small ORFs and functional microproteins TF Martinez, S Lyons-Abbott, AL Bookout, EV De Souza, C Donaldson, ... Cell metabolism 35 (1), 166-183. e11, 2023 | 44 | 2023 |
| Handling the hurdles on the way to anti-tuberculosis drug development PF Dalberto, EV De Souza, BL Abbadi, CE Neves, RS Rambo, AS Ramos, ... Frontiers in Chemistry 8, 586294, 2020 | 30 | 2020 |
| Identification of potential inhibitors of Mycobacterium tuberculosis shikimate kinase: molecular docking, in silico toxicity and in vitro experiments T Freitas de Freitas, CD Roth, BL Abbadi, FSM Hopf, MA Perelló, ... Journal of Computer-Aided Molecular Design, 1-12, 2022 | 10 | 2022 |
| Bacterial Enoyl Reductases: the ever-growing list of Fabs, their mechanisms and inhibition FSM Hopf, CD Roth, EV de Souza, L Galina, AM Czeczot, P Machado, ... Frontiers in Microbiology, 2243, 2022 | 9 | 2022 |
| µProteInS—a proteogenomics pipeline for finding novel bacterial microproteins encoded by small ORFs EV de Souza, PF Dalberto, VP Machado, A Canedo, A Saghatelian, ... Bioinformatics 38 (9), 2612-2614, 2022 | 9 | 2022 |
| The antidepressant effect of bone marrow mononuclear cell transplantation in chronic stress PAS do Prado-Lima, GA Onsten, GN de Oliveira, GC Brito, IM Ghilardi, ... Journal of Psychopharmacology 33 (5), 632-639, 2019 | 9 | 2019 |
| An Inner Mitochondrial Membrane Microprotein from the SLC35A4 Upstream ORF Regulates Cellular Metabolism AL Rocha, V Pai, G Perkins, T Chang, J Ma, EV De Souza, Q Chu, ... Journal of Molecular Biology 436 (10), 168559, 2024 | 5 | 2024 |
| EPSP Synthase-Depleted Cells Are Aromatic Amino Acid Auxotrophs in Mycobacterium smegmatis MA Duque-Villegas, BL Abbadi, PR Romero, LB Matter, L Galina, ... Microbiology spectrum 9 (3), e00009-21, 2021 | 4 | 2021 |
| Rp3: Ribosome profiling-assisted proteogenomics improves coverage and confidence during microprotein discovery E Vieira de Souza, A L Bookout, CA Barnes, B Miller, P Machado, ... Nature Communications 15 (1), 1-14, 2024 | 2 | 2024 |
| The Integration of Proteogenomics and Ribosome Profiling Circumvents Key Limitations to Increase the Coverage and Confidence of Novel Microproteins EV de Souza, AL Bookout, CA Barnes, B Miller, P Machado, LA Basso, ... bioRxiv, 2023.09. 27.559809, 2023 | 2 | 2023 |
| Workflow of structural genomics and bioinformatic approaches to identify natural compounds able to inhibit species-specific proteins in Tetranychus urticae K Ruffatto, CR da Silva, ALW Berté, S Grabin, EV de Souza, RH Arriaza, ... Journal of Pest Science, 1-17, 2023 | 2 | 2023 |
| Evaluation of 3-Deoxy-D-Arabino-Heptulosonate 7-Phosphate Synthase (DAHPS) as a Vulnerable Target in Mycobacterium tuberculosis L Galina, FSM Hopf, BL Abbadi, NDM Sperotto, AM Czeczot, ... Microbiology Spectrum, e00728-22, 2022 | 2 | 2022 |
| Evaluating aroA gene essentiality and EPSP synthase vulnerability in Mycobacterium smegmatis under different nutritional conditions MA Duque-Villegas, BL Abbadi, PR Romero, L Galina, PF Dalberto, ... bioRxiv, 2020 | 1 | 2020 |
| Umbilical Mononuclear Cells and Fibroblast Interaction Downregulate the Expression of Cell Cycle Negative Control Genes DR Marinowic, G Zanirati, PN Azevedo, EV De Souza, F Bruzzo, SP Silva, ... Cellular Reprogramming (Formerly" Cloning and Stem Cells") 20 (5), 320-327, 2018 | 1 | 2018 |
| Large-scale proteogenomics characterization of microproteins in Mycobacterium tuberculosis EV de Souza, PF Dalberto, AC Miranda, A Saghatelian, AM Pinto, ... Scientific Reports 14 (1), 31186, 2024 | | 2024 |
| Microprotein-encoding RNA regulation in cells treated with pro-inflammatory and pro-fibrotic stimuli VJ Pai, CJ Lau, A Garcia-Ruiz, C Donaldson, JM Vaughan, B Miller, ... BMC genomics 25 (1), 1034, 2024 | | 2024 |
| Identification of Novel Bacterial Microproteins Encoded by Small Open Reading Frames Using a Computational Proteogenomics Workflow EV de Souza, CV Bizarro Protein Bioinformatics, 19-34, 2024 | | 2024 |
| Large-scale proteogenomics characterization of the Mycobacterium tuberculosis hidden microproteome EV de Souza, PF Dalberto, AC Miranda, A Saghatelian, AFM Pinto, ... bioRxiv, 2023.11. 26.568715, 2023 | | 2023 |
| The Integration of Proteogenomics and Ribosome Profiling Circumvents Key Limitations to Increase the Coverage and Confidence of Novel Microproteins E Vieira de Souza, A Bookout, CA Barnes, B Miller, P Machado, LA Basso, ... | | 2023 |
| ANÁLISE FUNCIONAL DE NOVAS MICROPROTEÍNAS INTRINSECAMENTE DESORDENADAS EM MYCOBACTERIUM TUBERCULOSIS AC Miranda, EV de Souza, RA Caceres, CV Bizarro Programa de Pós-Graduação em Biologia Celular e Molecular da, 9, 2023 | | 2023 |
