| Adaptive introgression underlies polymorphic seasonal camouflage in snowshoe hares MR Jones, LS Mills, PC Alves, CM Callahan, JM Alves, DJR Lafferty, ... Science 360 (6395), 1355-1358, 2018 | 277 | 2018 |
| Genetic basis for red coloration in birds RJ Lopes, JD Johnson, MB Toomey, MS Ferreira, PM Araujo, ... Current Biology 26 (11), 1427-1434, 2016 | 258 | 2016 |
| Invasion from the cold past: extensive introgression of mountain hare (Lepus timidus) mitochondrial DNA into three other hare species in northern Iberia J MELO‐FERREIRA, P Boursot, F Suchentrunk, N Ferrand, PC Alves Molecular Ecology 14 (8), 2459-2464, 2005 | 257 | 2005 |
| The era of reference genomes in conservation genomics G Formenti, K Theissinger, C Fernandes, I Bista, A Bombarely, C Bleidorn, ... Trends in Ecology & Evolution 37 (3), 197-202, 2022 | 238 | 2022 |
| Reference-free population genomics from next-generation transcriptome data and the vertebrate–invertebrate gap P Gayral, J Melo-Ferreira, S Glémin, N Bierne, M Carneiro, B Nabholz, ... PLoS genetics 9 (4), e1003457, 2013 | 194 | 2013 |
| How genomics can help biodiversity conservation K Theissinger, C Fernandes, G Formenti, I Bista, PR Berg, C Bleidorn, ... Trends in genetics 39 (7), 545-559, 2023 | 193 | 2023 |
| Reference‐free transcriptome assembly in non‐model animals from next‐generation sequencing data V Cahais, P Gayral, G Tsagkogeorga, J MELO‐FERREIRA, ... Molecular ecology resources 12 (5), 834-845, 2012 | 175 | 2012 |
| Function and underlying mechanisms of seasonal colour moulting in mammals and birds: what keeps them changing in a warming world? M Zimova, K Hackländer, JM Good, J Melo‐Ferreira, PC Alves, LS Mills Biological Reviews 93 (3), 1478-1498, 2018 | 170 | 2018 |
| The ubiquitous mountain hare mitochondria: multiple introgressive hybridization in hares, genus Lepus PC Alves, J Melo-Ferreira, H Freitas, P Boursot Philosophical Transactions of the Royal Society B: Biological Sciences 363 …, 2008 | 159 | 2008 |
| The rise and fall of the mountain hare (Lepus timidus) during Pleistocene glaciations: expansion and retreat with hybridization in the Iberian Peninsula J MELO‐FERREIRA, P Boursot, E Randi, A Kryukov, F Suchentrunk, ... Molecular Ecology 16 (3), 605-618, 2007 | 142 | 2007 |
| Recurrent introgression of mitochondrial DNA among hares (Lepus spp.) revealed by species-tree inference and coalescent simulations J Melo-Ferreira, P Boursot, M Carneiro, PJ Esteves, L Farelo, PC Alves Systematic biology 61 (3), 367-381, 2012 | 136 | 2012 |
| Winter color polymorphisms identify global hot spots for evolutionary rescue from climate change LS Mills, EV Bragina, AV Kumar, M Zimova, DJR Lafferty, J Feltner, ... Science 359 (6379), 1033-1036, 2018 | 129 | 2018 |
| The elusive nature of adaptive mitochondrial DNA evolution of an arctic lineage prone to frequent introgression J Melo-Ferreira, J Vilela, MM Fonseca, RR da Fonseca, P Boursot, ... Genome biology and evolution 6 (4), 886-896, 2014 | 108 | 2014 |
| The genomic architecture of population divergence between subspecies of the European rabbit M Carneiro, FW Albert, S Afonso, RJ Pereira, H Burbano, R Campos, ... PLoS genetics 10 (8), e1003519, 2014 | 106 | 2014 |
| The genomic impact of historical hybridization with massive mitochondrial DNA introgression FA Seixas, P Boursot, J Melo-Ferreira Genome biology 19 (1), 91, 2018 | 99 | 2018 |
| The genomic legacy from the extinct Lepus timidus to the three hare species of Iberia: contrast between mtDNA, sex chromosomes and autosomes J MELO‐FERREIRA, PC Alves, H Freitas, N Ferrand, P Boursot Molecular Ecology 18 (12), 2643-2658, 2009 | 99 | 2009 |
| Evidence for widespread positive and purifying selection across the European rabbit (Oryctolagus cuniculus) genome M Carneiro, FW Albert, J Melo-Ferreira, N Galtier, P Gayral, ... Molecular biology and evolution 29 (7), 1837-1849, 2012 | 94 | 2012 |
| Cryptic speciation in the field vole: a multilocus approach confirms three highly divergent lineages in Eurasia J Paupério, JS Herman, J Melo‐Ferreira, M Jaarola, PC Alves, JB Searle Molecular ecology 21 (24), 6015-6032, 2012 | 93 | 2012 |
| Advances in Ecological Speciation: an integrative approach R Faria, S Renaut, J Galindo, C Pinho, J Melo‐Ferreira, M Melo, F Jones, ... Molecular ecology 23 (3), 513-521, 2014 | 85 | 2014 |
| Insights into the evolution of the new variant rabbit haemorrhagic disease virus (GI. 2) and the identification of novel recombinant strains D Silvério, AM Lopes, J Melo‐Ferreira, MJ Magalhães, P Monterroso, ... Transboundary and emerging diseases 65 (4), 983-992, 2018 | 72 | 2018 |