| SELFE: A semi-implicit Eulerian–Lagrangian finite-element model for cross-scale ocean circulation Y Zhang, AM Baptista Ocean modelling 21 (3-4), 71-96, 2008 | 731 | 2008 |
| Salmon at river's end: the role of the estuary in the decline and recovery of Columbia River salmon DL Bottom, CA Simenstad, J Burke, AM Baptista, DA Jay, KK Jone, ... | 398 | 2005 |
| A cross-scale model for 3D baroclinic circulation in estuary–plume–shelf systems: I. Formulation and skill assessment Y Zhang, AM Baptista, EP Myers Continental Shelf Research 24 (18), 2187-2214, 2004 | 376 | 2004 |
| Research challenges in environmental observation and forecasting systems DC Steere, A Baptista, D McNamee, C Pu, J Walpole Proceedings of the 6th annual international conference on Mobile computing …, 2000 | 326 | 2000 |
| Spatial variability overwhelms seasonal patterns in bacterioplankton communities across a river to ocean gradient CS Fortunato, L Herfort, P Zuber, AM Baptista, BC Crump The ISME journal 6 (3), 554-563, 2012 | 302 | 2012 |
| Progress in the prediction of pKa values in proteins E Alexov, EL Mehler, N Baker, A M. Baptista, Y Huang, F Milletti, ... Proteins: structure, function, and bioinformatics 79 (12), 3260-3275, 2011 | 289 | 2011 |
| River influences on shelf ecosystems: introduction and synthesis BM Hickey, RM Kudela, JD Nash, KW Bruland, WT Peterson, ... Journal of Geophysical Research: Oceans 115 (C2), 2010 | 179 | 2010 |
| Solution of advection-dominated transport by Eulerian-Lagrangian methods using the backwards method of characteristics AEM Baptista Massachusetts Institute of Technology, 1987 | 148 | 1987 |
| On the effect of tidal flats on the hydrodynamics of the Tagus estuary AB Fortunato, A Oliveira, AM Baptista Oceanologica Acta 22 (1), 31-44, 1999 | 124 | 1999 |
| A cross-scale model for 3D baroclinic circulation in estuary–plume–shelf systems: II. Application to the Columbia River AM Baptista, Y Zhang, A Chawla, M Zulauf, C Seaton, EP Myers Iii, ... Continental shelf research 25 (7-8), 935-972, 2005 | 120 | 2005 |
| Thetis coastal ocean model: discontinuous Galerkin discretization for the three-dimensional hydrostatic equations T Kärnä, SC Kramer, L Mitchell, DA Ham, MD Piggott, AM Baptista Geoscientific Model Development 11 (11), 4359-4382, 2018 | 119 | 2018 |
| A cross-scale numerical modeling system for management support of oil spill accidents A Azevedo, A Oliveira, AB Fortunato, J Zhang, AM Baptista Marine pollution bulletin 80 (1-2), 132-147, 2014 | 113 | 2014 |
| Diagnostic modeling of residence times in estuaries A Oliveira, AM Baptista Water Resources Research 33 (8), 1935-1946, 1997 | 112 | 1997 |
| A three-dimensional model of tidal currents in the mouth of the Tagus estuary AB Fortunato, AM Baptista, RA Luettich Jr Continental Shelf Research 17 (14), 1689-1714, 1997 | 111 | 1997 |
| Seasonal and interannual variability of the Columbia River plume: A perspective enabled by multiyear simulation databases M Burla, AM Baptista, Y Zhang, S Frolov Journal of Geophysical Research: Oceans 115 (C2), 2010 | 102 | 2010 |
| Seasonal variability and estuary–shelf interactions in circulation dynamics of a river-dominated estuary A Chawla, DA Jay, AM Baptista, M Wilkin, C Seaton Estuaries and Coasts 31, 269-288, 2008 | 100 | 2008 |
| An efficient and robust tsunami model on unstructured grids. Part I: Inundation benchmarks YJ Zhang, AM Baptista Pure and Applied Geophysics 165, 2229-2248, 2008 | 98 | 2008 |
| Coastal upwelling supplies oxygen-depleted water to the Columbia River estuary GC Roegner, JA Needoba, AM Baptista PloS one 6 (4), e18672, 2011 | 97 | 2011 |
| Confidence levels for tsunami-inundation limits in northern Oregon inferred from a 10,000-year history of great earthquakes at the Cascadia subduction zone GR Priest, C Goldfinger, K Wang, RC Witter, Y Zhang, AM Baptista Natural Hazards 54, 27-73, 2010 | 88 | 2010 |
| Disentangling bottom-up and top-down effects on survival during early ocean residence in a population of Chinook salmon (Oncorhynchus tshawytscha) JA Miller, DJ Teel, A Baptista, CA Morgan Canadian Journal of Fisheries and Aquatic Sciences 70 (4), 617-629, 2013 | 86 | 2013 |