| PredictSNP: robust and accurate consensus classifier for prediction of disease-related mutations J Bendl, J Stourac, O Salanda, A Pavelka, ED Wieben, J Zendulka, ... PLoS computational biology 10 (1), e1003440, 2014 | 840 | 2014 |
| CAVER Analyst 2.0: analysis and visualization of channels and tunnels in protein structures and molecular dynamics trajectories A Jurcik, D Bednar, J Byska, SM Marques, K Furmanova, L Daniel, ... Bioinformatics 34 (20), 3586-3588, 2018 | 334 | 2018 |
| HotSpot Wizard 3.0: web server for automated design of mutations and smart libraries based on sequence input information L Sumbalova, J Stourac, T Martinek, D Bednar, J Damborsky Nucleic acids research 46 (W1), W356-W362, 2018 | 264 | 2018 |
| Caver Web 1.0: identification of tunnels and channels in proteins and analysis of ligand transport J Stourac, O Vavra, P Kokkonen, J Filipovic, G Pinto, J Brezovsky, ... Nucleic acids research 47 (W1), W414-W422, 2019 | 231 | 2019 |
| PredictSNP2: a unified platform for accurately evaluating SNP effects by exploiting the different characteristics of variants in distinct genomic regions J Bendl, M Musil, J Štourač, J Zendulka, J Damborský, J Brezovský PLoS computational biology 12 (5), e1004962, 2016 | 203 | 2016 |
| FireProt: web server for automated design of thermostable proteins M Musil, J Stourac, J Bendl, J Brezovsky, Z Prokop, J Zendulka, ... Nucleic acids research 45 (W1), W393-W399, 2017 | 183 | 2017 |
| FireProtDB: database of manually curated protein stability data J Stourac, J Dubrava, M Musil, J Horackova, J Damborsky, S Mazurenko, ... Nucleic acids research 49 (D1), D319-D324, 2021 | 118 | 2021 |
| HotSpot Wizard 2.0: automated design of site-specific mutations and smart libraries in protein engineering J Bendl, J Stourac, E Sebestova, O Vavra, M Musil, J Brezovsky, ... Nucleic acids research 44 (W1), W479-W487, 2016 | 112 | 2016 |
| Computational design of enzymes for biotechnological applications J Planas-Iglesias, SM Marques, GP Pinto, M Musil, J Stourac, ... Biotechnology Advances 47, 107696, 2021 | 91 | 2021 |
| EnzymeMiner: automated mining of soluble enzymes with diverse structures, catalytic properties and stabilities J Hon, S Borko, J Stourac, Z Prokop, J Zendulka, D Bednar, T Martinek, ... Nucleic acids research 48 (W1), W104-W109, 2020 | 90 | 2020 |
| CaverDock: a molecular docking-based tool to analyse ligand transport through protein tunnels and channels O Vavra, J Filipovic, J Plhak, D Bednar, SM Marques, J Brezovsky, ... Bioinformatics 35 (23), 4986-4993, 2019 | 80 | 2019 |
| FireProtASR: A Web Server for Fully Automated Ancestral Sequence Reconstruction M Musil, RT Khan, A Beier, J Stourac, H Konegger, J Damborsky, ... Briefings in Bioinformatics 22 (4), bbaa337, 2021 | 71 | 2021 |
| PDBe-KB: collaboratively defining the biological context of structural data Nucleic acids research 50 (D1), D534-D542, 2022 | 43 | 2022 |
| CalFitter: a web server for analysis of protein thermal denaturation data S Mazurenko, J Stourac, A Kunka, S Nedeljković, D Bednar, Z Prokop, ... Nucleic acids research 46 (W1), W344-W349, 2018 | 42 | 2018 |
| Fast screening of inhibitor binding/unbinding using novel software tool CaverDock GP Pinto, O Vavra, J Filipovic, J Stourac, D Bednar, J Damborsky Frontiers in Chemistry 7, 709, 2019 | 25 | 2019 |
| LoopGrafter: a web tool for transplanting dynamical loops for protein engineering J Planas-Iglesias, F Opaleny, P Ulbrich, J Stourac, Z Sanusi, GP Pinto, ... Nucleic Acids Research 50 (W1), W465-W473, 2022 | 22 | 2022 |
| Fully Automated Ancestral Sequence Reconstruction using FireProtASR RT Khan, M Musil, J Stourac, J Damborsky, D Bednar Current Protocols 1 (2), e30, 2021 | 17 | 2021 |
| Top 10 metrics for life science software good practices H Artaza, NC Hong, M Corpas, A Corpuz, R Hooft, RC Jiménez, ... F1000Research 5, ELIXIR-2000, 2016 | 16 | 2016 |
| SoluProtMutDB: A manually curated database of protein solubility changes upon mutations J Velecký, M Hamsikova, J Stourac, M Musil, J Damborsky, D Bednar, ... Computational and Structural Biotechnology Journal 20, 6339-6347, 2022 | 15 | 2022 |
| NewProt–a protein engineering portal A Schwarte, M Genz, L Skalden, A Nobili, C Vickers, O Melse, R Kuipers, ... Protein Engineering, Design and Selection 30 (6), 441-447, 2017 | 13 | 2017 |
Jiri DamborskyMasaryk UniversityVahvistettu sähköpostiosoite verkkotunnuksessa chemi.muni.cz