| Wordom: a program for efficient analysis of molecular dynamics simulations M Seeber, M Cecchini, F Rao, G Settanni, A Caflisch Bioinformatics 23 (19), 2625-2627, 2007 | 311 | 2007 |
| Wordom: A user‐friendly program for the analysis of molecular structures, trajectories, and free energy surfaces M Seeber, A Felline, F Raimondi, S Muff, R Friedman, F Rao, A Caflisch, ... Journal of computational chemistry 32 (6), 1183-1194, 2011 | 272 | 2011 |
| Replica exchange molecular dynamics simulations of amyloid peptide aggregation M Cecchini, F Rao, M Seeber, A Caflisch The Journal of chemical physics 121 (21), 10748-10756, 2004 | 243 | 2004 |
| Mapping and fitting the peripheral benzodiazepine receptor binding site by carboxamide derivatives. Comparison of different approaches to quantitative ligand− receptor … M Anzini, A Cappelli, S Vomero, M Seeber, MC Menziani, T Langer, ... Journal of medicinal chemistry 44 (8), 1134-1150, 2001 | 92 | 2001 |
| webPSN v2. 0: a webserver to infer fingerprints of structural communication in biomacromolecules A Felline, M Seeber, F Fanelli Nucleic acids research 48 (W1), W94-W103, 2020 | 76 | 2020 |
| Synthesis, Screening, and Molecular Modeling of New Potent and Selective Antagonists at the α1d Adrenergic Receptor A Leonardi, D Barlocco, F Montesano, G Cignarella, G Motta, R Testa, ... Journal of medicinal chemistry 47 (8), 1900-1918, 2004 | 67 | 2004 |
| A mixed protein structure network and elastic network model approach to predict the structural communication in biomolecular systems: the PDZ2 domain from tyrosine phosphatase … F Raimondi, A Felline, M Seeber, S Mariani, F Fanelli Journal of chemical theory and computation 9 (5), 2504-2518, 2013 | 61 | 2013 |
| WebPSN: a web server for high-throughput investigation of structural communication in biomacromolecules M Seeber, A Felline, F Raimondi, S Mariani, F Fanelli Bioinformatics 31 (5), 779-781, 2015 | 60 | 2015 |
| Quaternary structure predictions of transmembrane proteins starting from the monomer: a docking-based approach D Casciari, M Seeber, F Fanelli BMC bioinformatics 7, 1-16, 2006 | 58 | 2006 |
| Structural insights into retinitis pigmentosa from unfolding simulations of rhodopsin mutants F Fanelli, M Seeber The FASEB Journal 24 (9), 3196-3209, 2010 | 45 | 2010 |
| Mechanisms of inter-and intramolecular communication in GPCRs and G proteins F Raimondi, M Seeber, PG De Benedetti, F Fanelli Journal of the American Chemical Society 130 (13), 4310-4325, 2008 | 44 | 2008 |
| Molecular Dynamics Simulations of the Ligand-Induced Chemical Information Transfer in the 5-HT1A Receptor M Seeber, PG De Benedetti, F Fanelli Journal of chemical information and computer sciences 43 (5), 1520-1531, 2003 | 44 | 2003 |
| Small-Molecule Protein-Protein Interaction Inhibitor of Oncogenic Rho Signaling D Diviani, F Raimondi, CD Del Vescovo, E Dreyer, E Reggi, H Osman, ... Cell chemical biology 23 (9), 1135-1146, 2016 | 32 | 2016 |
| PSNtools for standalone and web-based structure network analyses of conformational ensembles A Felline, M Seeber, F Fanelli Computational and Structural Biotechnology Journal 20, 640-649, 2022 | 29 | 2022 |
| Structure network analysis to gain insights into GPCR function F Fanelli, A Felline, F Raimondi, M Seeber Biochemical Society Transactions 44 (2), 613-618, 2016 | 26 | 2016 |
| Monomeric dark rhodopsin holds the molecular determinants for transducin recognition: insights from computational analysis D Dell’Orco, M Seeber, F Fanelli FEBS letters 581 (5), 944-948, 2007 | 26 | 2007 |
| Computational modeling of intramolecular and intermolecular communication in GPCRs F Fanelli, PG De Benedetti, F Raimondi, M Seeber Current Protein and Peptide Science 10 (2), 173-185, 2009 | 25 | 2009 |
| Bulky side chains and non-native salt bridges slow down the folding of a cross-linked helical peptide: a combined molecular dynamics and time-resolved infrared spectroscopy study B Paoli, M Seeber, EHG Backus, JA Ihalainen, P Hamm, A Caflisch The Journal of Physical Chemistry B 113 (13), 4435-4442, 2009 | 18 | 2009 |
| Probing fragment complementation by rigid-body docking: in silico reconstitution of calbindin D9k D Dell'Orco, M Seeber, PG De Benedetti, F Fanelli Journal of chemical information and modeling 45 (5), 1429-1438, 2005 | 18 | 2005 |
| Sequential unfolding of individual helices of bacterioopsin observed in molecular dynamics simulations of extraction from the purple membrane M Seeber, F Fanelli, E Paci, A Caflisch Biophysical journal 91 (9), 3276-3284, 2006 | 16 | 2006 |