| Efficient exploration of the space of reconciled gene trees GJ Szöllősi, W Rosikiewicz, B Boussau, E Tannier, V Daubin Systematic biology 62 (6), 901-912, 2013 | 219 | 2013 |
| DNA methylation-calling tools for Oxford Nanopore sequencing: a survey and human epigenome-wide evaluation Y Liu, W Rosikiewicz, Z Pan, N Jillette, P Wang, A Taghbalout, J Foox, ... Genome biology 22, 1-33, 2021 | 179 | 2021 |
| TET2 deficiency causes germinal center hyperplasia, impairs plasma cell differentiation, and promotes B-cell lymphomagenesis PM Dominguez, H Ghamlouch, W Rosikiewicz, P Kumar, W Béguelin, ... Cancer discovery 8 (12), 1632-1653, 2018 | 168 | 2018 |
| CANTATAdb: a collection of plant long non-coding RNAs MW Szcześniak, W Rosikiewicz, I Makałowska Plant and Cell Physiology 57 (1), e8-e8, 2016 | 164 | 2016 |
| Biological functions of natural antisense transcripts W Rosikiewicz, I Makałowska Acta Biochimica Polonica 63 (4), 665-673, 2016 | 76 | 2016 |
| Graph embedding and unsupervised learning predict genomic sub-compartments from HiC chromatin interaction data H Ashoor, X Chen, W Rosikiewicz, J Wang, A Cheng, P Wang, Y Ruan, ... Nature communications 11 (1), 1173, 2020 | 73 | 2020 |
| Natural antisense transcripts in diseases: From modes of action to targeted therapies E Wanowska, MR Kubiak, W Rosikiewicz, I Makałowska, MW Szcześniak Wiley Interdisciplinary Reviews: RNA 9 (2), e1461, 2018 | 65 | 2018 |
| Enhanced CRISPR-based DNA demethylation by Casilio-ME-mediated RNA-guided coupling of methylcytosine oxidation and DNA repair pathways A Taghbalout, M Du, N Jillette, W Rosikiewicz, A Rath, CD Heinen, S Li, ... Nature communications 10 (1), 4296, 2019 | 60 | 2019 |
| “Orphan” retrogenes in the human genome J Ciomborowska, W Rosikiewicz, D Szklarczyk, W Makałowski, ... Molecular biology and evolution 30 (2), 384-396, 2012 | 57 | 2012 |
| Acute depletion of CTCF rewires genome-wide chromatin accessibility B Xu, H Wang, S Wright, J Hyle, Y Zhang, Y Shao, M Niu, Y Fan, ... Genome biology 22 (1), 244, 2021 | 46 | 2021 |
| TET2 deficiency reprograms the germinal center B cell epigenome and silences genes linked to lymphomagenesis W Rosikiewicz, X Chen, PM Dominguez, H Ghamlouch, S Aoufouchi, ... Science advances 6 (25), eaay5872, 2020 | 41 | 2020 |
| RetrogeneDB–a database of plant and animal retrocopies W Rosikiewicz, M Kabza, JG Kosiński, J Ciomborowska-Basheer, ... Database 2017, bax038, 2017 | 38 | 2017 |
| Acute myeloid leukemias with UBTF tandem duplications are sensitive to menin inhibitors JM Barajas, M Rasouli, M Umeda, R Hiltenbrand, S Abdelhamed, ... Blood 143 (7), 619-630, 2024 | 30 | 2024 |
| PROSER1 mediates TET2 O-GlcNAcylation to regulate DNA demethylation on UTX-dependent enhancers and CpG islands X Wang, W Rosikiewicz, Y Sedkov, T Martinez, BS Hansen, P Schreiner, ... Life Science Alliance 5 (1), 2022 | 20 | 2022 |
| Targeting DCAF5 suppresses SMARCB1-mutant cancer by stabilizing SWI/SNF S Radko-Juettner, H Yue, JA Myers, RD Carter, AN Robertson, P Mittal, ... Nature 628 (8007), 442-449, 2024 | 17 | 2024 |
| Genomic profiling identifies genes and pathways dysregulated by HEY1–NCOA2 fusion and shines a light on mesenchymal chondrosarcoma tumorigenesis W Qi, W Rosikiewicz, Z Yin, B Xu, H Jiang, S Wan, Y Fan, G Wu, L Wang The Journal of Pathology 257 (5), 579-592, 2022 | 16 | 2022 |
| ZBTB18 restricts chromatin accessibility and prevents transcriptional adaptations that drive metastasis R Wang, AB Bhatt, BA Minden-Birkenmaier, OK Travis, S Tiwari, H Jia, ... Science Advances 9 (1), eabq3951, 2023 | 13 | 2023 |
| Inter-population differences in retrogene loss and expression in humans M Kabza, MR Kubiak, A Danek, W Rosikiewicz, S Deorowicz, A Polański, ... PLoS Genetics 11 (10), e1005579, 2015 | 12 | 2015 |
| Interrogating bromodomain inhibitor resistance in KMT2A-rearranged leukemia through combinatorial CRISPR screens S Wright, J Hu, H Wang, J Hyle, Y Zhang, G Du, MY Konopleva, ... Proceedings of the National Academy of Sciences 120 (16), e2220134120, 2023 | 9 | 2023 |
| OverGeneDB: a database of 5′ end protein coding overlapping genes in human and mouse genomes W Rosikiewicz, Y Suzuki, I Makałowska Nucleic Acids Research 46 (D1), D186-D193, 2018 | 9 | 2018 |