Dmitry Ravcheev

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Ines ThieleUniversity of GalwayAdresse e-mail validée de universityofgalway.ie
Almut HeinkenUniversity of LorraineAdresse e-mail validée de univ-lorraine.fr
Ronan M.T. FlemingAssoc. Prof., School of Medicine, University of Galway.Adresse e-mail validée de universityofgalway.ie
Stefania MagnusdottirPhD Student, University of LuxembourgAdresse e-mail validée de uni.lu
Alexey KazakovLawrence Berkeley National LaboratoryAdresse e-mail validée de lbl.gov
Semen LeynSanford Burnham Prebys Medical Discovery InstituteAdresse e-mail validée de sbpdiscovery.org
Anna Gerasimova,PhDAssociate Director of Bioinformatics, Quest DiagnosticsAdresse e-mail validée de questdiagnostics.com
Inna DubchakSenior Scientist, Lawrence Berkeley National Laboratory, USAAdresse e-mail validée de lbl.gov
Adam Paul ArkinDepartment of Bioengineering, University of California, Berkeley, Physical Biosciences Division, E.OAdresse e-mail validée de lbl.gov
Valérie de Crécy-LagardDistinguished Professor, Microbiology and Cell Science Dpt, University of FloridaAdresse e-mail validée de ufl.edu
Eugen BauerJohannes Gutenberg-Universität Mainz, Institute of Zoology, GermanyAdresse e-mail validée de uni-mainz.de
Alberto NoronhaNium SàrlAdresse e-mail validée de nium.io
Paul WilmesProfessorAdresse e-mail validée de uni.lu
Christian JägerLCSB - University of LuxembourgAdresse e-mail validée de uni.lu
Roman A. SutorminSoftware Engineer, GoogleAdresse e-mail validée de google.com
Adam GodzikProfessor, University of California Riverside School of MedicineAdresse e-mail validée de medsch.ucr.edu
Vsevolod MakeevCancer Research UK, ManchesterAdresse e-mail validée de manchester.ac.uk
Alexander Favorovresearch [email protected]; senior fellow [email protected]Adresse e-mail validée de sensi.org
Youjun FengZhejiang University School of MedicineAdresse e-mail validée de zju.edu.cn
Jelena ČuklinaNovartis AGAdresse e-mail validée de novartis.com

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Dmitry Ravcheev

MRM Health

Adresse e-mail validée de nuigalway.ie

Bioinformatics Comparative genomics Metabolic reconstruction Transcription regulation Molecular evolution


Titre Trier par citations Trier par année Trier par titre	Citée par Citée par	Année
Systematic genome assessment of B-vitamin biosynthesis suggests co-operation among gut microbes S Magnúsdóttir, D Ravcheev, V de Crécy-Lagard, I Thiele Frontiers in genetics 6, 148, 2015	812	2015
Generation of genome-scale metabolic reconstructions for 773 members of the human gut microbiota S Magnúsdóttir, A Heinken, L Kutt, DA Ravcheev, E Bauer, A Noronha, ... Nature biotechnology 35 (1), 81-89, 2017	791	2017
RegPrecise 3.0–a resource for genome-scale exploration of transcriptional regulation in bacteria PS Novichkov, AE Kazakov, DA Ravcheev, SA Leyn, GY Kovaleva, ... BMC genomics 14, 1-12, 2013	413	2013
The Virtual Metabolic Human database: integrating human and gut microbiome metabolism with nutrition and disease A Noronha, J Modamio, Y Jarosz, E Guerard, N Sompairac, G Preciat, ... Nucleic acids research 47 (D1), D614-D624, 2019	367	2019
Systematic assessment of secondary bile acid metabolism in gut microbes reveals distinct metabolic capabilities in inflammatory bowel disease A Heinken, DA Ravcheev, F Baldini, L Heirendt, RMT Fleming, I Thiele Microbiome 7, 1-18, 2019	319*	2019
A Gibbs sampler for identification of symmetrically structured, spaced DNA motifs with improved estimation of the signal length AV Favorov, MS Gelfand, AV Gerasimova, DA Ravcheev, AA Mironov, ... Bioinformatics 21 (10), 2240-2245, 2005	164	2005
Polysaccharides utilization in human gut bacterium Bacteroides thetaiotaomicron: comparative genomics reconstruction of metabolic and regulatory networks DA Ravcheev, A Godzik, AL Osterman, DA Rodionov BMC genomics 14, 1-17, 2013	159	2013
Genome-scale metabolic reconstruction of 7,302 human microorganisms for personalized medicine A Heinken, J Hertel, G Acharya, DA Ravcheev, M Nyga, OE Okpala, ... Nature Biotechnology 41 (9), 1320-1331, 2023	157	2023
Transcriptional regulation of central carbon and energy metabolism in bacteria by redox-responsive repressor Rex DA Ravcheev, X Li, H Latif, K Zengler, SA Leyn, YD Korostelev, ... Journal of bacteriology 194 (5), 1145-1157, 2012	154	2012
Comparative genomics of ethanolamine utilization O Tsoy, D Ravcheev, A Mushegian Journal of bacteriology 191 (23), 7157-7164, 2009	117	2009
Comparative Genomic Analysis of the Human Gut Microbiome Reveals a Broad Distribution of Metabolic Pathways for the Degradation of Host-Synthetized Mucin Glycans and … DA Ravcheev, I Thiele Frontiers in Genetics 8, 111, 2017	105	2017
Nitrogen Fixation and Molecular Oxygen: Comparative Genomic Reconstruction of Transcription Regulation in Alphaproteobacteria OV Tsoy, DA Ravcheev, J Čuklina, MS Gelfand Frontiers in microbiology 7, 1343, 2016	97	2016
Visualization of individual DNA loops and a map of loop domains in the human dystrophin gene OV Iarovaia, A Bystritskiy, D Ravcheev, R Hancock, SV Razin Nucleic acids research 32 (7), 2079-2086, 2004	93	2004
Comparative genomics and evolution of regulons of the LacI-family transcription factors DA Ravcheev, MS Khoroshkin, ON Laikova, OV Tsoy, NV Sernova, ... Frontiers in microbiology 5, 294, 2014	91	2014
Comparative genomic reconstruction of transcriptional networks controlling central metabolism in the Shewanella genus DA Rodionov, PS Novichkov, ED Stavrovskaya, IA Rodionova, X Li, ... BMC genomics 12, 1-17, 2011	80	2011
Redox-responsive repressor Rex modulates alcohol production and oxidative stress tolerance in Clostridium acetobutylicum L Zhang, X Nie, DA Ravcheev, DA Rodionov, J Sheng, Y Gu, S Yang, ... Journal of bacteriology 196 (22), 3949-3963, 2014	77	2014
Comparative genomic analysis of regulation of anaerobic respiration in ten genomes from three families of gamma-proteobacteria (Enterobacteriaceae, Pasteurellaceae, Vibrionaceae) DA Ravcheev, AV Gerasimova, AA Mironov, MS Gelfand BMC genomics 8, 1-17, 2007	67	2007
Genomic analysis of the human gut microbiome suggests novel enzymes involved in quinone biosynthesis DA Ravcheev, I Thiele Frontiers in microbiology 7, 128, 2016	66	2016
Inference of the transcriptional regulatory network in Staphylococcus aureus by integration of experimental and genomics-based evidence DA Ravcheev, AA Best, N Tintle, M DeJongh, AL Osterman, PS Novichkov, ... Journal of bacteriology 193 (13), 3228-3240, 2011	62	2011
Transcriptional regulation of the carbohydrate utilization network in Thermotoga maritima DA Rodionov, IA Rodionova, X Li, DA Ravcheev, Y Tarasova, VA Portnoy, ... Frontiers in microbiology 4, 244, 2013	57	2013

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