Brian Jiménez-García

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Coauteurs

Juan Fernandez-RecioInstituto de Ciencias de la Vid y del Vino (ICVV), CSIC / Uni. Rioja / Gob. RiojaAdresse e-mail validée de icvv.es
Alexandre M.J.J. BonvinUtrecht universityAdresse e-mail validée de uu.nl
Iain MoalGlaxoSmithKlineAdresse e-mail validée de gsk.com
Jorge Roel-TourisEMBO postdoctoral fellowAdresse e-mail validée de ibmb.csic.es
Zhiping WengProf & Chair, Department of Genomics and Computational Biology, UMASS Medical SchoolAdresse e-mail validée de umassmed.edu
Carles PonsInstitute for Research in BiomedicineAdresse e-mail validée de irbbarcelona.org
Miguel Romero-DuranaBarcelona Supercomputing CenterAdresse e-mail validée de pm.me
Thom VrevenVisterra, Inc.Adresse e-mail validée de visterrainc.com
Anna VangoneLarge Molecule Research - RocheAdresse e-mail validée de uu.nl
Marco Verlato, Ph.D.Istituto Nazionale di Fisica NucleareAdresse e-mail validée de pd.infn.it
Antonio RosatoAssociate Professor of Chemistry, University of FlorenceAdresse e-mail validée de unifi.it
Panagiotis KastritisProfessor of Integrative Structural Biochemistry, MLU Halle / ERA Chair for cryo-EM, NHRF, AthensAdresse e-mail validée de bct.uni-halle.de
Brian G. PierceAssociate Professor, Department of Cell Biology and Molecular Genetics, IBBR, University of MarylandAdresse e-mail validée de umd.edu
Raphael ChaleilComputational Protein Engineer, Basecamp ResearchAdresse e-mail validée de basecamp-research.com
Justas DapkūnasInstitute of Biotechnology, Life Sciences Center, Vilnius UniversityAdresse e-mail validée de bti.vu.lt
Luis Ángel Rodríguez LumbrerasInstituto de Ciencias de la Vid y del Vino (ICVV-CSIC)Adresse e-mail validée de icvv.es
Didier Barradas BautistaKing Abdullah University of Science and Technology:Adresse e-mail validée de kaust.edu.sa
Pau BernadoCentre de Biochimie StructuraleAdresse e-mail validée de cbs.cnrs.fr
Mikael TrelletFluigentAdresse e-mail validée de fluigent.com
João PGLM RodriguesPrincipal Scientist, Schrodinger IncAdresse e-mail validée de schrodinger.com

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Brian Jiménez-García

CTO at Zymvol Biomodeling | ORCID 0000-0001-7786-2109

Adresse e-mail validée de zymvol.com - Page d'accueil

macromolecular docking HPC artificial intelligence scientific software bioinformatics


Titre Trier par citations Trier par année Trier par titre	Citée par Citée par	Année
Structural biology in the clouds: the WeNMR-EOSC ecosystem RV Honorato, PI Koukos, B Jiménez-García, A Tsaregorodtsev, M Verlato, ... Frontiers in molecular biosciences 8, 729513, 2021	523	2021
Updates to the integrated protein–protein interaction benchmarks: docking benchmark version 5 and affinity benchmark version 2 T Vreven, IH Moal, A Vangone, BG Pierce, PL Kastritis, M Torchala, ... Journal of molecular biology 427 (19), 3031-3041, 2015	468	2015
SKEMPI 2.0: an updated benchmark of changes in protein–protein binding energy, kinetics and thermodynamics upon mutation J Jankauskaitė, B Jiménez-García, J Dapkūnas, J Fernández-Recio, ... Bioinformatics 35 (3), 462-469, 2019	301	2019
pyDockWEB: a web server for rigid-body protein–protein docking using electrostatics and desolvation scoring B Jiménez-García, C Pons, J Fernández-Recio Bioinformatics 29 (13), 1698-1699, 2013	299	2013
Prediction of homoprotein and heteroprotein complexes by protein docking and template‐based modeling: a CASP‐CAPRI experiment MF Lensink, S Velankar, A Kryshtafovych, SY Huang, ... Proteins: Structure, Function, and Bioinformatics 84, 323-348, 2016	169	2016
Blind prediction of homo‐and hetero‐protein complexes: The CASP13‐CAPRI experiment MF Lensink, G Brysbaert, N Nadzirin, S Velankar, RAG Chaleil, T Gerguri, ... Proteins: Structure, Function, and Bioinformatics 87 (12), 1200-1221, 2019	128	2019
Community‐wide evaluation of methods for predicting the effect of mutations on protein–protein interactions R Moretti, SJ Fleishman, R Agius, M Torchala, PA Bates, PL Kastritis, ... Proteins: Structure, Function, and Bioinformatics 81 (11), 1980-1987, 2013	115	2013
LightDock: a new multi-scale approach to protein–protein docking B Jiménez-García, J Roel-Touris, M Romero-Durana, M Vidal, ... Bioinformatics 34 (1), 49-55, 2018	105	2018
Prediction of protein assemblies, the next frontier: The CASP14‐CAPRI experiment MF Lensink, G Brysbaert, T Mauri, N Nadzirin, S Velankar, RAG Chaleil, ... Proteins: Structure, Function, and Bioinformatics 89 (12), 1800-1823, 2021	104	2021
Modeling antibody-antigen complexes by information-driven docking F Ambrosetti, B Jiménez-García, J Roel-Touris, AMJJ Bonvin Structure 28 (1), 119-129. e2, 2020	86	2020
pyDockSAXS: protein–protein complex structure by SAXS and computational docking B Jiménez-García, C Pons, DI Svergun, P Bernadó, J Fernández-Recio Nucleic acids research 43 (W1), W356-W361, 2015	76	2015
CCharPPI web server: computational characterization of protein–protein interactions from structure IH Moal, B Jiménez-García, J Fernández-Recio Bioinformatics 31 (1), 123-125, 2015	74	2015
Blind prediction of interfacial water positions in CAPRI MF Lensink, IH Moal, PA Bates, PL Kastritis, ASJ Melquiond, E Karaca, ... Proteins: Structure, Function, and Bioinformatics 82 (4), 620-632, 2014	63	2014
A protein‐RNA docking benchmark (II): Extended set from experimental and homology modeling data L Pérez‐Cano, B Jiménez‐García, J Fernández‐Recio Proteins: Structure, Function, and Bioinformatics 80 (7), 1872-1882, 2012	63	2012
The HADDOCK2. 4 web server for integrative modeling of biomolecular complexes RV Honorato, ME Trellet, B Jiménez-García, JJ Schaarschmidt, M Giulini, ... Nature Protocols, 1-23, 2024	59	2024
proABC-2: PRediction of AntiBody contacts v2 and its application to information-driven docking F Ambrosetti, TH Olsen, PP Olimpieri, B Jiménez-García, E Milanetti, ... Bioinformatics 36 (20), 5107-5108, 2020	46	2020
Impact of AlphaFold on structure prediction of protein complexes: The CASP15‐CAPRI experiment MF Lensink, G Brysbaert, N Raouraoua, PA Bates, M Giulini, RV Honorato, ... Proteins: Structure, Function, and Bioinformatics 91 (12), 1658-1683, 2023	43	2023
Integrative modeling of membrane-associated protein assemblies J Roel-Touris, B Jiménez-García, AMJJ Bonvin Nature communications 11 (1), 6210, 2020	38	2020
IRaPPA: information retrieval based integration of biophysical models for protein assembly selection IH Moal, D Barradas-Bautista, B Jiménez-García, M Torchala, ... Bioinformatics 33 (12), 1806-1813, 2017	38	2017
LightDock goes information-driven J Roel-Touris, AMJJ Bonvin, B Jiménez-García Bioinformatics 36 (3), 950-952, 2020	33	2020

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