Modeling and simulation of ion channels C Maffeo, S Bhattacharya, J Yoo, D Wells, A Aksimentiev Chemical reviews 112 (12), 6250, 2012 | 260 | 2012 |
Nanopore analysis of individual RNA/antibiotic complexes M Wanunu, S Bhattacharya, Y Xie, Y Tor, A Aksimentiev, M Drndic Acs Nano 5 (12), 9345-9353, 2011 | 96 | 2011 |
Rectification of the current in alpha-hemolysin pore depends on the cation type: the alkali series probed by MD simulations and experiments S Bhattacharya, L Muzard, L Payet, J Mathé, U Bockelmann, ... The journal of physical chemistry. C, Nanomaterials and interfaces 115 (10 …, 2011 | 93* | 2011 |
Molecular Dynamics Study of MspA Arginine-Mutants Predicts Slow DNA Translocations and Ion Current Blockades Indicative of DNA Sequence S Bhattacharya, IM Derrington, M Pavlenok, M Niederweis, JH Gundlach, ... ACS nano 6 (8), 6960, 2012 | 92 | 2012 |
Water mediates recognition of DNA sequence via ionic current blockade in a biological nanopore S Bhattacharya, J Yoo, A Aksimentiev ACS nano 10 (4), 4644, 2016 | 56 | 2016 |
Forced-Induced Desorption of a Polymer Chain Adsorbed on an Attractive Surface: Theory and Computer Experiment S Bhattacharya, VG Rostiashvili, A Milchev, TA Vilgis Macromolecules 42 (6), 2236-2250, 2009 | 40 | 2009 |
Adsorption of multiblock and random copolymer on a solid surface: Critical behavior and phase diagram S Bhattacharya, HP Hsu, A Milchev, VG Rostiashvili, TA Vilgis Macromolecules 41 (8), 2920-2930, 2008 | 35 | 2008 |
Polymer desorption under pulling: A dichotomic phase transition S Bhattacharya, VG Rostiashvili, A Milchev, TA Vilgis Physical Review E—Statistical, Nonlinear, and Soft Matter Physics 79 (3 …, 2009 | 26 | 2009 |
Adsorption kinetics of a single polymer on a solid plane S Bhattacharya, A Milchev, VG Rostiashvili, AY Grosberg, TA Vilgis Physical Review E—Statistical, Nonlinear, and Soft Matter Physics 77 (6 …, 2008 | 25 | 2008 |
Optimization of the molecular dynamics method for simulations of DNA and ion transport through biological nanopores DB Wells, S Bhattacharya, R Carr, C Maffeo, A Ho, J Comer, ... Nanopore-Based Technology, 165-186, 2012 | 23 | 2012 |
Pulling an adsorbed polymer chain off a solid surface S Bhattacharya, A Milchev, VG Rostiashvili, TA Vilgis The European Physical Journal E: Soft Matter and Biological Physics 29 (3 …, 2009 | 22 | 2009 |
Uncertainty in a Markov state model with missing states and rates: Application to a room temperature kinetic model obtained using high temperature molecular dynamics A Chatterjee, S Bhattacharya Journal of Chemical Physics, 2015 | 19 | 2015 |
Uncovering allostery and regulation in SAMHD1 through molecular dynamics simulations KK Patra, A Bhattacharya, S Bhattacharya Proteins: Structure, Function, and Bioinformatics 85 (7), 1266-1275, 2017 | 18 | 2017 |
A new class of enhanced kinetic sampling methods for building Markov state models AC A. Bhoutekar, S. Ghosh, S. Bhattacharya Journal of Chemical Physics 147, 152702, 2017 | 15 | 2017 |
Molecular dynamics investigation of a redox switch in the anti‐HIV protein SAMHD1 KK Patra, A Bhattacharya, S Bhattacharya Proteins: Structure, Function, and Bioinformatics 87 (9), 748-759, 2019 | 11 | 2019 |
Allosteric Signal Transduction in HIV-1 Restriction Factor SAMHD1 Proceeds via Reciprocal Handshake across Monomers KK Patra, A Bhattacharya, S Bhattacharya Journal of Chemical Information and Modeling 57 (10), 2523-2538, 2017 | 11 | 2017 |
Time-Dependent Markov State Models for Single Molecule Force Spectroscopy S Ghosh, A Chatterjee, S Bhattacharya Journal of chemical theory and computation 13 (3), 957-962, 2017 | 10 | 2017 |
Polymer chain adsorption on a solid surface: scaling arguments and computer simulations A Milchev, V Rostiashvili, S Bhattacharya, T Vilgis Nanophenomena at Surfaces: Fundamentals of Exotic Condensed Matter …, 2011 | 8 | 2011 |
Dimeric Hold States of Anti-HIV Protein SAMHD1 are Redox Tunable G Thapa, A Bhattacharya, S Bhattacharya Journal of Chemical Information and Modeling 60 (12), 6377-6391, 2020 | 7 | 2020 |
Probing the energy landscape of alanine dipeptide and decalanine using temperature as a tunable parameter in molecular dynamics A Chatterjee, S Bhattacharya Journal of Physics: Conference Series 759 (1), 012024, 2016 | 6 | 2016 |