Nikolay Dokholyan

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244 articles

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Feng DingProfessor of Physics, Clemson UniversityAdresse e-mail validée de clemson.edu
H. Eugene StanleyProfessor of Physics, Boston UniversityAdresse e-mail validée de bu.edu
Eugene ShakhnovichProfessor of Chemistry Harvard UniversityAdresse e-mail validée de chemistry.harvard.edu
Jian WangAssistant Professor, Penn State University College of MedicineAdresse e-mail validée de pennstatehealth.psu.edu
Elizabeth A. ProctorAssociate Professor, Pennsylvania State UniversityAdresse e-mail validée de psu.edu
Adrian SerohijosUniversity of MontrealAdresse e-mail validée de umontreal.ca
Prof. Shlomo HavlinProfessor of Physics, Bar-Ilan UniversityAdresse e-mail validée de biu.ac.il
Srinivas RamachandranAssistant Professor, University of Colorado School of MedicineAdresse e-mail validée de ucdenver.edu
Klaus M HahnProfessor of Pharmacology, University of North Carolina Chapel HillAdresse e-mail validée de med.unc.edu
Marino ConvertinoDesign TherapeuticsAdresse e-mail validée de parion.com
Sagar KhareAssistant Professor of Chemistry and Chemical Biology, Rutgers UniversityAdresse e-mail validée de rutgers.edu
Onur DagliyanAssistant professor, Karolinska InstituteAdresse e-mail validée de ki.se
Sharon CampbellUniversity of North CarolinaAdresse e-mail validée de med.unc.edu
Shantanu SharmaDirector AI and RPA at SVAM InternationalAdresse e-mail validée de alumni.unc.edu
Tamas HegedusSemmelweis UniversityAdresse e-mail validée de hegelab.org
Martina GentzschAssociate Professor of Cell Biology and Physiolgy, University of North CarolinaAdresse e-mail validée de med.unc.edu
Peter KingBP, Imperial CollegeAdresse e-mail validée de imperial.ac.uk
Venkat R ChirasaniR.L. Juliano Structural Bioinformatics Core, UNC-Chapel HillAdresse e-mail validée de med.unc.edu
Kevin M WeeksKenan Distinguished Professor, University of North Carolina - Chapel HillAdresse e-mail validée de unc.edu
Gerhard MeissnerUniversity of North Carolina at Chapel HillAdresse e-mail validée de med.unc.edu

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Nikolay Dokholyan

G. Thomas Passananti Professor

Adresse e-mail validée de psu.edu - Page d'accueil

Biophysics Biochemistry Computational Biology ML/AI Translational Science


Titre Trier par citations Trier par année Trier par titre	Citée par Citée par	Année
Amyloid oligomers: A joint experimental/computational perspective on Alzheimer’s disease, Parkinson’s disease, type II diabetes, and amyotrophic lateral sclerosis PH Nguyen, A Ramamoorthy, BR Sahoo, J Zheng, P Faller, JE Straub, ... Chemical reviews 121 (4), 2545-2647, 2021	564	2021
Eris: an automated estimator of protein stability S Yin, F Ding, NV Dokholyan Nature methods 4 (6), 466-467, 2007	468	2007
Phenylalanine-508 mediates a cytoplasmic–membrane domain contact in the CFTR 3D structure crucial to assembly and channel function AWR Serohijos, T Hegedűs, AA Aleksandrov, L He, L Cui, NV Dokholyan, ... Proceedings of the National Academy of Sciences 105 (9), 3256-3261, 2008	459	2008
Small-world view of the amino acids that play a key role in protein folding M Vendruscolo, NV Dokholyan, E Paci, M Karplus Physical Review E 65 (6), 061910, 2002	449	2002
Potentiator ivacaftor abrogates pharmacological correction of ΔF508 CFTR in cystic fibrosis DM Cholon, NL Quinney, ML Fulcher, CR Esther Jr, J Das, NV Dokholyan, ... Science translational medicine 6 (246), 246ra96-246ra96, 2014	382	2014
Discrete molecular dynamics studies of the folding of a protein-like model NV Dokholyan, SV Buldyrev, HE Stanley, EI Shakhnovich Folding and design 3 (6), 577-587, 1998	372	1998
Topological determinants of protein folding NV Dokholyan, L Li, F Ding, EI Shakhnovich Proceedings of the National Academy of Sciences 99 (13), 8637-8641, 2002	358	2002
Mechanism for the α‐helix to β‐hairpin transition F Ding, JM Borreguero, SV Buldyrey, HE Stanley, NV Dokholyan Proteins: Structure, Function, and Bioinformatics 53 (2), 220-228, 2003	357	2003
Ab initio folding of proteins with all-atom discrete molecular dynamics F Ding, D Tsao, H Nie, NV Dokholyan Structure 16 (7), 1010-1018, 2008	353	2008
Automated minimization of steric clashes in protein structures S Ramachandran, P Kota, F Ding, NV Dokholyan Proteins: Structure, Function, and Bioinformatics 79 (1), 261-270, 2011	346	2011
Allostery in its many disguises: from theory to applications SJ Wodak, E Paci, NV Dokholyan, IN Berezovsky, A Horovitz, J Li, ... Structure 27 (4), 566-578, 2019	339	2019
Ab initio RNA folding by discrete molecular dynamics: from structure prediction to folding mechanisms F Ding, S Sharma, P Chalasani, VV Demidov, NE Broude, NV Dokholyan Rna 14 (6), 1164-1173, 2008	326	2008
RNA-Puzzles: a CASP-like evaluation of RNA three-dimensional structure prediction JA Cruz, MF Blanchet, M Boniecki, JM Bujnicki, SJ Chen, S Cao, R Das, ... Rna 18 (4), 610-625, 2012	307	2012
iFoldRNA: three-dimensional RNA structure prediction and folding S Sharma, F Ding, NV Dokholyan Bioinformatics 24 (17), 1951-1952, 2008	270	2008
Molecular dynamics simulation of amyloid β dimer formation B Urbanc, L Cruz, F Ding, D Sammond, S Khare, SV Buldyrev, HE Stanley, ... Biophysical journal 87 (4), 2310-2321, 2004	254	2004
Controlling allosteric networks in proteins NV Dokholyan Chemical reviews 116 (11), 6463-6487, 2016	250	2016
The interface of protein structure, protein biophysics, and molecular evolution DA Liberles, SA Teichmann, I Bahar, U Bastolla, J Bloom, ... Protein Science 21 (6), 769-785, 2012	243	2012
Engineered allosteric activation of kinases in living cells AV Karginov, F Ding, P Kota, NV Dokholyan, KM Hahn Nature biotechnology 28 (7), 743-747, 2010	239	2010
MedusaScore: an accurate force field-based scoring function for virtual drug screening S Yin, L Biedermannova, J Vondrasek, NV Dokholyan Journal of chemical information and modeling 48 (8), 1656-1662, 2008	238	2008
Emergence of protein fold families through rational design F Ding, NV Dokholyan PLoS computational biology 2 (7), e85, 2006	238	2006

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