Joshua Quick

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Nicholas J LomanProfessor of Microbial Genomics and Bioinformatics, University of BirminghamAdresse e-mail validée de bham.ac.uk
Christopher QuinceEarlham InstituteAdresse e-mail validée de earlham.ac.uk
Melanie SchirmerTechnical University of MunichAdresse e-mail validée de tum.de
Brynjar Smári BjarnasonAdresse e-mail validée de binnisb.com
Mark PallenUniversity of East Anglia and Quadram InstituteAdresse e-mail validée de quadram.ac.uk
Jared SimpsonOntario Institute for Cancer ResearchAdresse e-mail validée de oicr.on.ca
Leo LahtiDepartment of Computing, University of Turku, FinlandAdresse e-mail validée de utu.fi
Chrystala ConstantinidouDivision of Microbiology and Infection, Warwick Medical School, University of WarwickAdresse e-mail validée de warwick.ac.uk
Anders F. AnderssonProfessor in Metagenomics, Science for Life Laboratory, KTH Royal Institute of TechnologyAdresse e-mail validée de scilifelab.se
Johannes AlnebergPhD Student, KTH Royal Institute of Technology, Science for Life Laboratory, School of Biotechnology, Division of Gene TechnologAdresse e-mail validée de scilifelab.se
Jacqueline Z-M ChanOxford Gene TechnologyAdresse e-mail validée de ogt.com
Konstantinos GerasimidisProfessor of Clinical NutritionAdresse e-mail validée de glasgow.ac.uk
Aaron QuinlanProfessor of Human Genetics, U. of Utah; https://github.com/arq5x/vitae/raw/master/quinlan.cv.pdfAdresse e-mail validée de genetics.utah.edu
Savita GossainConsultant Microbiologist, Public Health Laboratory, BirminghamAdresse e-mail validée de heartofengland.nhs.uk
Tim DallmanUniversity of UtrechtAdresse e-mail validée de uu.nl
Craig WinstanleyUniversity of LiverpoolAdresse e-mail validée de liv.ac.uk

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Joshua Quick

UKRI Future Leaders Fellow, University of Birmingham

Adresse e-mail validée de bham.ac.uk

Next-generation sequencing genomics microbiology


Titre Trier par citations Trier par année Trier par titre	Citée par Citée par	Année
Binning metagenomic contigs by coverage and composition J Alneberg, BS Bjarnason, I De Bruijn, M Schirmer, J Quick, UZ Ijaz, ... Nature methods 11 (11), 1144-1146, 2014	2208	2014
Nanopore sequencing and assembly of a human genome with ultra-long reads M Jain, S Koren, KH Miga, J Quick, AC Rand, TA Sasani, JR Tyson, ... Nature biotechnology 36 (4), 338-345, 2018	2031	2018
Real-time, portable genome sequencing for Ebola surveillance J Quick, NJ Loman, S Duraffour, JT Simpson, E Severi, L Cowley, JA Bore, ... Nature 530 (7589), 228-232, 2016	1597	2016
A complete bacterial genome assembled de novo using only nanopore sequencing data NJ Loman, J Quick, JT Simpson Nature methods 12 (8), 733-735, 2015	1413	2015
Evaluating the effects of SARS-CoV-2 spike mutation D614G on transmissibility and pathogenicity E Volz, V Hill, JT McCrone, A Price, D Jorgensen, Á O’Toole, J Southgate, ... Cell 184 (1), 64-75. e11, 2021	1172	2021
Multiplex PCR method for MinION and Illumina sequencing of Zika and other virus genomes directly from clinical samples J Quick, ND Grubaugh, ST Pullan, IM Claro, AD Smith, K Gangavarapu, ... Nature protocols 12 (6), 1261-1276, 2017	1172	2017
An amplicon-based sequencing framework for accurately measuring intrahost virus diversity using PrimalSeq and iVar ND Grubaugh, K Gangavarapu, J Quick, NL Matteson, JG De Jesus, ... Genome biology 20, 1-19, 2019	917	2019
Hospital admission and emergency care attendance risk for SARS-CoV-2 delta (B. 1.617. 2) compared with alpha (B. 1.1. 7) variants of concern: a cohort study KA Twohig, T Nyberg, A Zaidi, S Thelwall, MA Sinnathamby, S Aliabadi, ... The Lancet Infectious Diseases 22 (1), 35-42, 2022	889	2022
Telomere-to-telomere assembly of a complete human X chromosome KH Miga, S Koren, A Rhie, MR Vollger, A Gershman, A Bzikadze, ... Nature 585 (7823), 79-84, 2020	760	2020
Nanopore native RNA sequencing of a human poly (A) transcriptome RE Workman, AD Tang, PS Tang, M Jain, JR Tyson, R Razaghi, ... Nature methods 16 (12), 1297-1305, 2019	662	2019
Establishment and cryptic transmission of Zika virus in Brazil and the Americas NR Faria, J Quick, IM Claro, J Theze, JG de Jesus, M Giovanetti, ... Nature 546 (7658), 406-410, 2017	661	2017
Virus genomes reveal factors that spread and sustained the Ebola epidemic G Dudas, LM Carvalho, T Bedford, AJ Tatem, G Baele, NR Faria, DJ Park, ... Nature 544 (7650), 309-315, 2017	471	2017
Recurrent emergence of SARS-CoV-2 spike deletion H69/V70 and its role in the Alpha variant B. 1.1. 7 B Meng, SA Kemp, G Papa, R Datir, IATM Ferreira, S Marelli, WT Harvey, ... Cell reports 35 (13), 2021	466	2021
Genomic epidemiology reveals multiple introductions of Zika virus into the United States ND Grubaugh, JT Ladner, MUG Kraemer, G Dudas, AL Tan, ... Nature 546 (7658), 401-405, 2017	385	2017
A culture-independent sequence-based metagenomics approach to the investigation of an outbreak of Shiga-toxigenic Escherichia coli O104: H4 NJ Loman, C Constantinidou, M Christner, H Rohde, JZM Chan, J Quick, ... Jama 309 (14), 1502-1510, 2013	377	2013
Changes in symptomatology, reinfection, and transmissibility associated with the SARS-CoV-2 variant B. 1.1. 7: an ecological study MS Graham, CH Sudre, A May, M Antonelli, B Murray, T Varsavsky, ... The Lancet Public Health 6 (5), e335-e345, 2021	374	2021
Improvements to the ARTIC multiplex PCR method for SARS-CoV-2 genome sequencing using nanopore JR Tyson, P James, D Stoddart, N Sparks, A Wickenhagen, G Hall, ... BioRxiv, 2020	361	2020
Coast-to-coast spread of SARS-CoV-2 during the early epidemic in the United States JR Fauver, ME Petrone, EB Hodcroft, K Shioda, HY Ehrlich, AG Watts, ... Cell 181 (5), 990-996. e5, 2020	354	2020
Rapid draft sequencing and real-time nanopore sequencing in a hospital outbreak of Salmonella J Quick, P Ashton, S Calus, C Chatt, S Gossain, J Hawker, S Nair, K Neal, ... Genome biology 16, 1-14, 2015	339	2015
Genomic and epidemiological monitoring of yellow fever virus transmission potential NR Faria, MUG Kraemer, SC Hill, J Góes de Jesus, RS Aguiar, FCM Iani, ... Science 361 (6405), 894-899, 2018	319	2018

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