| Nucleotide Transformer: building and evaluating robust foundation models for human genomics H Dalla-Torre, L Gonzalez, J Mendoza-Revilla, N Lopez Carranza, ... Nature Methods, 1-11, 2024 | 162 | 2024 |
| Diversity policy gradient for sample efficient quality-diversity optimization T Pierrot, V Macé, F Chalumeau, A Flajolet, G Cideron, K Beguir, A Cully, ... Proceedings of the Genetic and Evolutionary Computation Conference, 1075-1083, 2022 | 93* | 2022 |
| Learning compositional neural programs with recursive tree search and planning T Pierrot, G Ligner, SE Reed, O Sigaud, N Perrin, A Laterre, D Kas, ... Advances in Neural Information Processing Systems 32, 2019 | 47 | 2019 |
| Multi-objective quality diversity optimization T Pierrot, G Richard, K Beguir, A Cully Proceedings of the Genetic and Evolutionary Computation Conference, 139-147, 2022 | 43 | 2022 |
| Early computational detection of potential high-risk SARS-CoV-2 variants K Beguir, MJ Skwark, Y Fu, T Pierrot, NL Carranza, A Laterre, I Kadri, ... Computers in biology and medicine 155, 106618, 2023 | 34 | 2023 |
| Neuroevolution is a competitive alternative to reinforcement learning for skill discovery F Chalumeau, R Boige, B Lim, V Macé, M Allard, A Flajolet, A Cully, ... arXiv preprint arXiv:2210.03516, 2022 | 23 | 2022 |
| A foundational large language model for edible plant genomes J Mendoza-Revilla, E Trop, L Gonzalez, M Roller, H Dalla-Torre, ... Communications Biology 7 (1), 835, 2024 | 20 | 2024 |
| QDax: A library for quality-diversity and population-based algorithms with hardware acceleration F Chalumeau, B Lim, R Boige, M Allard, L Grillotti, M Flageat, V Macé, ... Journal of Machine Learning Research 25 (108), 1-16, 2024 | 18 | 2024 |
| Fast population-based reinforcement learning on a single machine A Flajolet, CB Monroc, K Beguir, T Pierrot International Conference on Machine Learning, 6533-6547, 2022 | 14 | 2022 |
| Offline reinforcement learning hands-on L Monier, J Kmec, A Laterre, T Pierrot, V Courgeau, O Sigaud, K Beguir arXiv preprint arXiv:2011.14379, 2020 | 14 | 2020 |
| Advancing dna language models: The genomics long-range benchmark CH Kao, E Trop, MK Polen, Y Schiff, BP de Almeida, A Gokaslan, T Pierrot, ... ICLR 2024 Workshop on Machine Learning for Genomics Explorations, 2024 | 10 | 2024 |
| SegmentNT: annotating the genome at single-nucleotide resolution with DNA foundation models BP de Almeida, H Dalla-Torre, G Richard, C Blum, L Hexemer, M Gélard, ... bioRxiv, 2024.03. 14.584712, 2024 | 10 | 2024 |
| The quality-diversity transformer: Generating behavior-conditioned trajectories with decision transformers V Macé, R Boige, F Chalumeau, T Pierrot, G Richard, N Perrin-Gilbert Proceedings of the Genetic and Evolutionary Computation Conference, 1221-1229, 2023 | 10 | 2023 |
| First-order and second-order variants of the gradient descent in a unified framework T Pierrot, N Perrin-Gilbert, O Sigaud Artificial Neural Networks and Machine Learning–ICANN 2021: 30th …, 2021 | 10 | 2021 |
| ChatNT: A Multimodal Conversational Agent for DNA, RNA and Protein Tasks G Richard, BP de Almeida, H Dalla-Torre, C Blum, L Hexemer, P Pandey, ... bioRxiv, 2024.04. 30.591835, 2024 | 9 | 2024 |
| Evolving populations of diverse RL agents with map-elites T Pierrot, A Flajolet arXiv preprint arXiv:2303.12803, 2023 | 9 | 2023 |
| Assessing Quality-Diversity Neuro-Evolution Algorithms Performance in Hard Exploration Problems F Chalumeau, T Pierrot, V Macé, A Flajolet, K Beguir, A Cully, ... arXiv preprint arXiv:2211.13742, 2022 | 9 | 2022 |
| Contrasting Sequence with Structure: Pre-training Graph Representations with PLMs L Robinson, T Atkinson, L Copoiu, P Bordes, T Pierrot, TD Barrett bioRxiv, 2023.12. 01.569611, 2023 | 5 | 2023 |
| Pasta: Pretrained action-state transformer agents R Boige, Y Flet-Berliac, A Flajolet, G Richard, T Pierrot arXiv preprint arXiv:2307.10936, 2023 | 5 | 2023 |
| Improving the Data Efficiency of Multi-Objective Quality-Diversity through Gradient Assistance and Crowding Exploration H Janmohamed, T Pierrot, A Cully Proceedings of the Genetic and Evolutionary Computation Conference, 165-173, 2023 | 5 | 2023 |
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