| Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project Management Group Liefer Laura A. 51 Wetterstrand Kris A. 51 Good Peter J. 51 ... nature 447 (7146), 799-816, 2007 | 6068 | 2007 |
| Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution Project management: Fulton Lucinda A. 1 Mardis Elaine R. 1 Wilson Richard K. 1 Nature 432 (7018), 695-716, 2004 | 2967 | 2004 |
| 28-way vertebrate alignment and conservation track in the UCSC Genome Browser W Miller, K Rosenbloom, RC Hardison, M Hou, J Taylor, B Raney, ... Genome research 17 (12), 1797-1808, 2007 | 323 | 2007 |
| Erythroid GATA1 function revealed by genome-wide analysis of transcription factor occupancy, histone modifications, and mRNA expression Y Cheng, W Wu, SA Kumar, D Yu, W Deng, T Tripic, DC King, KB Chen, ... Genome research 19 (12), 2172-2184, 2009 | 274 | 2009 |
| Evaluation of regulatory potential and conservation scores for detecting cis-regulatory modules in aligned mammalian genome sequences DC King, J Taylor, L Elnitski, F Chiaromonte, W Miller, RC Hardison Genome research 15 (8), 1051-1060, 2005 | 258 | 2005 |
| ESPERR: learning strong and weak signals in genomic sequence alignments to identify functional elements J Taylor, S Tyekucheva, DC King, RC Hardison, W Miller, F Chiaromonte Genome research 16 (12), 1596-1604, 2006 | 154 | 2006 |
| From biomedicine to natural history research: EST resources for ambystomatid salamanders S Putta, JJ Smith, JA Walker, M Rondet, DW Weisrock, J Monaghan, ... BMC genomics 5, 1-17, 2004 | 113 | 2004 |
| Finding cis-regulatory elements using comparative genomics: some lessons from ENCODE data DC King, J Taylor, Y Zhang, Y Cheng, HA Lawson, J Martin, ... Genome research 17 (6), 775-786, 2007 | 96 | 2007 |
| Experimental validation of predicted mammalian erythroid cis-regulatory modules H Wang, Y Zhang, Y Cheng, Y Zhou, DC King, J Taylor, F Chiaromonte, ... Genome research 16 (12), 1480-1492, 2006 | 78 | 2006 |
| Transcriptional enhancement by GATA1-occupied DNA segments is strongly associated with evolutionary constraint on the binding site motif Y Cheng, DC King, LC Dore, X Zhang, Y Zhou, Y Zhang, C Dorman, ... Genome research 18 (12), 1896-1905, 2008 | 44 | 2008 |
| Primary sequence and epigenetic determinants of in vivo occupancy of genomic DNA by GATA1 Y Zhang, W Wu, Y Cheng, DC King, RS Harris, J Taylor, F Chiaromonte, ... Nucleic acids research 37 (21), 7024-7038, 2009 | 41 | 2009 |
| Genomic characterization of 99 viruses from the bunyavirus families Nairoviridae, Peribunyaviridae, and Phenuiviridae, including 35 previously unsequenced … ML Kapuscinski, NA Bergren, BJ Russell, JS Lee, EM Borland, ... PLoS Pathogens 17 (3), e1009315, 2021 | 37 | 2021 |
| LCD-Composer: an intuitive, composition-centric method enabling the identification and detailed functional mapping of low-complexity domains SM Cascarina, DC King, E Osborne Nishimura, ED Ross NAR genomics and bioinformatics 3 (2), lqab048, 2021 | 20 | 2021 |
| Hyper-active RAS/MAPK introduces cancer-specific mitotic vulnerabilities JA Herman, RR Romain, P Hoellerbauer, HK Shirnekhi, DC King, ... Proceedings of the National Academy of Sciences 119 (41), e2208255119, 2022 | 17 | 2022 |
| A tool-kit for cDNA microarray and promoter analysis NH Shah, DC King, PN Shah, NV Fedoroff Bioinformatics 19 (14), 1846-1848, 2003 | 14 | 2003 |
| Computational prediction of cis-regulatory modules from multispecies alignments using Galaxy, Table Browser, and GALA L Elnitski, D King, RC Hardison Gene Mapping, Discovery, and Expression: Methods and Protocols, 91-103, 2006 | 4 | 2006 |
| Transcriptome profiling of the Caenorhabditis elegans intestine reveals that ELT-2 negatively and positively regulates intestinal gene expression within the context … RTP Williams, DC King, IR Mastroianni, JL Hill, NW Apenes, G Ramirez, ... Genetics 224 (4), iyad088, 2023 | 3 | 2023 |
| Recent natural selection in human noncoding sequences HA Lawson, J Joel Martin, D King, B Giardine, W Miller, R Hardison Science. Submitted, 2007 | 2 | 2007 |
| The transcription factor ELT-2 positively and negatively impacts direct target genes to modulate the Caenorhabditis elegans intestinal transcriptome DC King, RTP Williams, IR Mastroianni, J Hill, NW Apenas, G Ramirez, ... bioRxiv, 2021 | 1 | 2021 |
| Phylogenetic conservation of cis-regulatory regions using sequence alignability and cladistic motifs DC King The Pennsylvania State University, 2009 | 1 | 2009 |
