Pedro Madrigal

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Daniel GaffneyVP, Genomics, BioMarin Pharmaceutical LtdAdresse e-mail validée de bmrn.com
Ali MortazaviProfessor of Developmental and Cell Biology, University of California, IrvineAdresse e-mail validée de uci.edu
Ana ConesaInstitute for Integrative Systems Biology, Spanish National Research CouncilAdresse e-mail validée de csic.es
David Gomez-CabreroAssoc. Professor KAUSTAdresse e-mail validée de kaust.edu.sa
Tao LiuAssociate Professor, Roswell Park Comprehensive Cancer CenterAdresse e-mail validée de roswellpark.org
Timothy BaileyUniversity of Nevada, RenoAdresse e-mail validée de unr.edu
Qunhua LiPenn State UniversityAdresse e-mail validée de psu.edu
Christopher MasonWorldQuant Professor of Genomics, Physiology, & Biophysics, Weill Cornell MedicineAdresse e-mail validée de med.cornell.edu
Stefania GiacomelloSciLifeLab/KTHAdresse e-mail validée de scilifelab.se
John MarioniGenentechAdresse e-mail validée de gene.com
Davis J McCarthyHead, Bioinformatics and Cellular Genomics, St Vincent's Institute of Medical ResearchAdresse e-mail validée de svi.edu.au
Oliver StegleGerman Cancer Research Center (DKFZ) & EMBL HeidelbergAdresse e-mail validée de dkfz.de
Korbinian SchneebergerLudwig-Maximilians-University Munich (LMU); Max Planck Institute for Plant Breeding ResearchAdresse e-mail validée de lmu.de
Afshin BeheshtiUniversity of PittsburghAdresse e-mail validée de pitt.edu
Kasthuri VenkateswaranNASA Jet Propulsion LaboratoryAdresse e-mail validée de jpl.nasa.gov
Francesca ChiaromonteProfessor of Statistics, Pennsylvania State University, Sant'Anna School of Advanced StudiesAdresse e-mail validée de psu.edu
Matthew ReimherrAmazon, Pennsylvania State UniversityAdresse e-mail validée de psu.edu
Hendrik G StunnenbergPrincess Maxima Centre Pediatric Oncology
Sarah A. TeichmannUniversity of CambridgeAdresse e-mail validée de cam.ac.uk
Irene PapatheodorouEarlham InstituteAdresse e-mail validée de ebi.ac.uk

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Pedro Madrigal

EMBL-European Bioinformatics Institute

Adresse e-mail validée de ebi.ac.uk - Page d'accueil

Bioinformatics Computational biology Gene expression Multiomics Space biology


Titre Trier par citations Trier par année Trier par titre	Citée par Citée par	Année
A Survey of Best Practices for RNA-seq Data Analysis A Conesa, P Madrigal, S Tarazona, D Gomez-Cabrero, A Cervera, ... Genome Biology 17, 13, 2016	3352	2016
Cholangiocytes derived from human induced pluripotent stem cells for disease modeling and drug validation F Sampaziotis, M Cardoso de Brito, P Madrigal, A Bertero, K Saeb-Parsy, ... Nature Biotechnology, 2015	405	2015
Practical guidelines for the comprehensive analysis of ChIP-seq data T Bailey, P Krajewski, I Ladunga, C Lefebvre, Q Li, T Liu, P Madrigal, ... PLoS Computational Biology 9 (11), e1003326, 2013	362	2013
The SMAD2/3 interactome reveals that TGFβ controls m⁶A mRNA methylation in pluripotency A Bertero, S Brown, P Madrigal, A Osnato, D Ortmann, L Yiangou, ... Nature 555 (7695), 256-259, 2018	348	2018
Reconstruction of the mouse extrahepatic biliary tree using primary human extrahepatic cholangiocyte organoids F Sampaziotis, AW Justin, OC Tysoe, S Sawiak, EM Godfrey, SS Upponi, ... Nature medicine 23 (8), 954, 2017	307	2017
Reconstruction of the mouse extrahepatic biliary tree using primary human extrahepatic cholangiocyte organoids F Sampaziotis, AW Justin, OC Tysoe, S Sawiak, EM Godfrey, SS Upponi, ... Nature medicine 23 (8), 954-963, 2017	307	2017
Single-cell RNA-sequencing of differentiating iPS cells reveals dynamic genetic effects on gene expression ASE Cuomo, DD Seaton, DJ McCarthy, I Martinez, MJ Bonder, ... Nature Communications 11, 1-14, 2020	278	2020
Dynamics of chromatin accessibility and gene regulation by MADS-domain transcription factors in flower development A Pajoro, P Madrigal, JM Muiño, JT Matus, J Jin, MA Mecchia, ... Genome biology 15 (3), R41, 2014	276	2014
Combinatorial activities of SHORT VEGETATIVE PHASE and FLOWERING LOCUS C define distinct modes of flowering regulation in Arabidopsis JL Mateos, P Madrigal, K Tsuda, V Rawat, R Richter, M Romera-Branchat, ... Genome Biology 16, 31, 2015	181	2015
Initiation of stem cell differentiation involves cell cycle-dependent regulation of developmental genes by Cyclin D S Pauklin, P Madrigal, A Bertero, L Vallier Genes & development 30, 421-433, 2016	160	2016
Activin/nodal signaling and NANOG orchestrate human embryonic stem cell fate decisions by controlling the H3K4me3 chromatin mark A Bertero, P Madrigal, A Galli, NC Hubner, I Moreno, D Burks, S Brown, ... Genes & development 29 (7), 702-717, 2015	159	2015
Functional Divergence of the Arabidopsis Florigen-Interacting bZIP Transcription Factors FD and FDP M Romera-Branchat, E Severing, C Pocard, H Ohr, C Vincent, G Née, ... Cell Reports 31 (9), 107717, 2020	71	2020
AP-1 Takes Centre Stage in Enhancer Chromatin Dynamics P Madrigal, K Alasoo Trends in Cell Biology 28 (7), 3, 2018	62	2018
hiPSC hepatocyte model demonstrates the role of unfolded protein response and inflammatory networks in α1-antitrypsin deficiency CP Segeritz, ST Rashid, M Cardoso de Brito, MS Paola, A Ordonez, ... Journal of Hepatology, 2018	57	2018
Current bioinformatic approaches to identify DNase I hypersensitive sites and genomic footprints from DNase-seq data P Madrigal, P Krajewski Frontiers in Genetics 3, 230, 2012	54	2012
GATA6 Cooperates with EOMES/SMAD2/3 to Deploy the Gene Regulatory Network Governing Human Definitive Endoderm and Pancreas Formation CY Chia, P Madrigal, SLIJ Denil, I Martinez, J Garcia-Bernardo, ... Stem Cell Reports 12 (1), 57-70, 2019	51	2019
Divergence of regulatory networks governed by the orthologous transcription factors FLC and PEP1 in Brassicaceae species JL Mateos, V Tilmes, P Madrigal, E Severing, R Richter, CWM Rijkenberg, ... Proceedings of the National Academy of Sciences, 10.1073/pnas.1618075114, 2017	46	2017
On Accounting for Sequence-Specific Bias in Genome-Wide Chromatin Accessibility Experiments: Recent Advances and Contradictions P Madrigal Front. Bioeng. Biotechnol. 3, 144, 2015	34	2015
Mutational synergy during leukemia induction remodels chromatin accessibility, histone modifications and three-dimensional DNA topology to alter gene expression H Yun, N Narayan, S Vohra, G Giotopoulos, A Mupo, P Madrigal, D Sasca, ... Nature Genetics, 2021	30	2021
Functional data analysis for computational biology M Cremona, H Xu, K Makova, M Reimherr, F Chiaromonte, P Madrigal Bioinformatics 35 (17), 2019	26	2019

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