| DeepImpute: an accurate, fast, and scalable deep neural network method to impute single-cell RNA-seq data C Arisdakessian, O Poirion, B Yunits, X Zhu, LX Garmire Genome biology 20, 1-14, 2019 | 278 | 2019 |
| Granatum: a graphical single-cell RNA-Seq analysis pipeline for genomics scientists X Zhu, TK Wolfgruber, A Tasato, C Arisdakessian, DG Garmire, ... Genome medicine 9, 1-12, 2017 | 81 | 2017 |
| Evaluation of STAR and Kallisto on single cell RNA-Seq data alignment Y Du, Q Huang, C Arisdakessian, LX Garmire G3: Genes, Genomes, Genetics 10 (5), 1775-1783, 2020 | 61 | 2020 |
| The amphibian microbiome exhibits poor resilience following pathogen-induced disturbance AJ Jani, J Bushell, CG Arisdakessian, M Belcaid, DM Boiano, C Brown, ... The ISME Journal 15 (6), 1628-1640, 2021 | 57 | 2021 |
| MetaFlow| mics: scalable and reproducible nextflow pipelines for the analysis of microbiome marker data C Arisdakessian, SB Cleveland, M Belcaid practice and experience in advanced research computing, 120-124, 2020 | 34 | 2020 |
| CoCoNet: an efficient deep learning tool for viral metagenome binning CG Arisdakessian, OD Nigro, GF Steward, G Poisson, M Belcaid Bioinformatics 37 (18), 2803-2810, 2021 | 21 | 2021 |
| GranatumX: a community-engaging, modularized, and flexible webtool for single-cell data analysis DG Garmire, X Zhu, A Mantravadi, Q Huang, B Yunits, Y Liu, T Wolfgruber, ... Genomics, Proteomics and Bioinformatics 19 (3), 452-460, 2021 | 10* | 2021 |
| Granatum: a graphical single-cell RNA-Seq analysis pipeline for genomics scientists. Genome Med 9: 108 X Zhu, TK Wolfgruber, A Tasato, C Arisdakessian, DG Garmire, ... | 5 | 2017 |
| The C-MĀIKI gateway: a modern science platform for analyzing microbiome data S Cleveland, C Arisdakessian, C Nelson, M Belcaid, K Frank, G Jacobs Practice and experience in advanced research computing, 1-7, 2022 | 3 | 2022 |
| Geology and land use shape nitrogen and sulfur cycling groundwater microbial communities in Pacific Island aquifers SJ Watson, C Arisdakessian, M Petelo, K Keliipuleole, DK Tachera, ... ISME communications 3 (1), 58, 2023 | 1 | 2023 |
| Taming DNA clustering in massive datasets with SLYMFAST M Belcaid, C Arisdakessian, Y Kravchenko ACM SIGAPP Applied Computing Review 22 (1), 15-23, 2022 | 1 | 2022 |
| Groundwater microbial communities reflect geothermal activity on volcanic island SJ Watson, C Arisdakessian, M Petelo, K Keliipuleole, DK Tachera, ... Geobiology 22 (2), e12591, 2024 | | 2024 |
| Phylogenomic comparison of viruses across basalt-hosted oceanic basement systems O Nigro, CR Spotkaeff, C Arisdakessian, S Jungbluth, MS Rappe, ... The Astrobiology Science Conference (AbSciCon) 2022, 101-02, 2022 | | 2022 |
| Across the Basement: A Comparison of Viruses in the Crustal Aquifer at North Pond and Juan de Fuca Ridge C Spotkaeff, C Arisdakessian, S Jungbluth, M Rappe, G Steward, O Nigro AGU Fall Meeting Abstracts 2021, B55J-1307, 2021 | | 2021 |
| Efficient DNA sequence partitioning using probabilistic subsets and hypergraphs M Belcaid, C Arisdakessian, Y Kravchenko Proceedings of the 36th Annual ACM Symposium on Applied Computing, 4-9, 2021 | | 2021 |
| Inversion of normal mode functions and seabed properties using non-linear time sampling of low-frequency bowhead whale calls on a vertical array A Thode, C Arisdakessian, J Bonnel The Journal of the Acoustical Society of America 138 (3_Supplement), 1794-1794, 2015 | | 2015 |
Lana GarmireUniversity of MichiganAdresse e-mail validée de med.umich.edu