Ines Thiele

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Ronan M.T. FlemingAssoc. Prof., School of Medicine, University of Galway.Adresse e-mail validée de universityofgalway.ie
Almut HeinkenUniversity of LorraineAdresse e-mail validée de univ-lorraine.fr
Stefania MagnusdottirPhD Student, University of LuxembourgAdresse e-mail validée de uni.lu
Thomas HankemeierProfessor of Analytical Biosciences, Leiden UniversityAdresse e-mail validée de lacdr.leidenuniv.nl
Adam FeistUC San Diego (UCSD) / Technical University of Denmark (DTU)Adresse e-mail validée de ucsd.edu
Nathan E LewisGRA Eminent Scholar and Professor, University of GeorgiaAdresse e-mail validée de uga.edu
Gabi KastenmüllerHelmholtz Zentrum München - German Research Center for Environmental HealthAdresse e-mail validée de helmholtz-muenchen.de
Nathan D. PriceProfessor, Buck Institute for Research on AgingAdresse e-mail validée de buckinstitute.org
Karen P. ScottSenior Research Fellow, Rowett Institute of Nutrition and Health, University of AberdeenAdresse e-mail validée de abdn.ac.uk
Oliver FiehnUC DavisAdresse e-mail validée de ucdavis.edu
David BroadhurstProfessor, Biosystems Data Science, School of Science, Edith Cowan UniversityAdresse e-mail validée de ecu.edu.au
Marta CascanteUniversitat de BarcelonaAdresse e-mail validée de ub.edu
Warwick DunnDepartment of Biochemistry and Systems Biology, ISMIB, University of LiverpoolAdresse e-mail validée de liverpool.ac.uk
David S. WishartProfessor, Depts. of Computing Science and Biological Sciences - University of AlbertaAdresse e-mail validée de ualberta.ca
Matej OrešičProfessor of Medicine (Systems Medicine), Örebro University & University of TurkuAdresse e-mail validée de oru.se
Lorraine BrennanUCDAdresse e-mail validée de ucd.ie
Markus HerrgardCTO, BioInnovation InstituteAdresse e-mail validée de bii.dk
Michael SaundersProfessor of Operations Research, Stanford UniversityAdresse e-mail validée de stanford.edu
Valérie de Crécy-LagardDistinguished Professor, Microbiology and Cell Science Dpt, University of FloridaAdresse e-mail validée de ufl.edu
Heinz P. NasheuerProfessor, Dr. rer. nat., University of Galway, School of Biological and Chemical SciencesAdresse e-mail validée de nuigalway.ie

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Ines Thiele

University of Galway

Adresse e-mail validée de universityofgalway.ie

constraint-based modeling multiscale modeling human metabolism gut microbiome gut-brain-axis


Titre Trier par citations Trier par année Trier par titre	Citée par Citée par	Année
What is flux balance analysis? JD Orth, I Thiele, BØ Palsson Nature biotechnology 28 (3), 245-248, 2010	4452	2010
Gut microbiota functions: metabolism of nutrients and other food components I Rowland, G Gibson, A Heinken, K Scott, J Swann, I Thiele, K Tuohy European journal of nutrition 57, 1-24, 2018	2733	2018
The subsystems approach to genome annotation and its use in the project to annotate 1000 genomes R Overbeek, T Begley, RM Butler, JV Choudhuri, HY Chuang, M Cohoon, ... Nucleic acids research 33 (17), 5691-5702, 2005	2353	2005
A protocol for generating a high-quality genome-scale metabolic reconstruction I Thiele, BØ Palsson Nature protocols 5 (1), 93-121, 2010	2082	2010
Global reconstruction of the human metabolic network based on genomic and bibliomic data NC Duarte, SA Becker, N Jamshidi, I Thiele, ML Mo, TD Vo, R Srivas, ... Proceedings of the National Academy of Sciences 104 (6), 1777-1782, 2007	1696	2007
Quantitative prediction of cellular metabolism with constraint-based models: the COBRA Toolbox v2. 0 J Schellenberger, R Que, RMT Fleming, I Thiele, JD Orth, AM Feist, ... Nature protocols 6 (9), 1290-1307, 2011	1694	2011
A community-driven global reconstruction of human metabolism I Thiele, N Swainston, RMT Fleming, A Hoppe, S Sahoo, MK Aurich, ... Nature biotechnology 31 (5), 419-425, 2013	1230	2013
Creation and analysis of biochemical constraint-based models using the COBRA Toolbox v. 3.0 L Heirendt, S Arreckx, T Pfau, SN Mendoza, A Richelle, A Heinken, ... Nature protocols 14 (3), 639-702, 2019	1191	2019
Reconstruction of biochemical networks in microorganisms AM Feist, MJ Herrgård, I Thiele, JL Reed, BØ Palsson Nature Reviews Microbiology 7 (2), 129-143, 2009	1108	2009
Systematic genome assessment of B-vitamin biosynthesis suggests co-operation among gut microbes S Magnúsdóttir, D Ravcheev, V de Crécy-Lagard, I Thiele Frontiers in genetics 6, 148, 2015	809	2015
Generation of genome-scale metabolic reconstructions for 773 members of the human gut microbiota S Magnúsdóttir, A Heinken, L Kutt, DA Ravcheev, E Bauer, A Noronha, ... Nature biotechnology 35 (1), 81-89, 2017	790	2017
Recon3D enables a three-dimensional view of gene variation in human metabolism E Brunk, S Sahoo, DC Zielinski, A Altunkaya, A Dräger, N Mih, F Gatto, ... Nature biotechnology 36 (3), 272-281, 2018	718	2018
Metabolomics enables precision medicine:“a white paper, community perspective” RD Beger, W Dunn, MA Schmidt, SS Gross, JA Kirwan, M Cascante, ... Metabolomics 12, 1-15, 2016	615*	2016
Towards multidimensional genome annotation JL Reed, I Famili, I Thiele, BO Palsson Nature Reviews Genetics 7 (2), 130-141, 2006	456	2006
Computationally efficient flux variability analysis S Gudmundsson, I Thiele BMC bioinformatics 11, 1-3, 2010	453	2010
The Virtual Metabolic Human database: integrating human and gut microbiome metabolism with nutrition and disease A Noronha, J Modamio, Y Jarosz, E Guerard, N Sompairac, G Preciat, ... Nucleic acids research 47 (D1), D614-D624, 2019	367	2019
Detailing the optimality of photosynthesis in cyanobacteria through systems biology analysis J Nogales, S Gudmundsson, EM Knight, BO Palsson, I Thiele Proceedings of the National Academy of Sciences 109 (7), 2678-2683, 2012	364	2012
Systematic assessment of secondary bile acid metabolism in gut microbes reveals distinct metabolic capabilities in inflammatory bowel disease A Heinken, DA Ravcheev, F Baldini, L Heirendt, RMT Fleming, I Thiele Microbiome 7, 1-18, 2019	318*	2019
A genome-scale metabolic reconstruction of Pseudomonas putida KT2440: iJN746 as a cell factory J Nogales, B Palsson, I Thiele BMC systems biology 2 (1), 79, 2008	314	2008
Expanded Metabolic Reconstruction of Helicobacter pylori (iIT341 GSM/GPR): an In Silico Genome-Scale Characterization of Single- and Double-Deletion Mutants I Thiele, TD Vo, ND Price, BØ Palsson Journal of bacteriology 187 (16), 5818-5830, 2005	295	2005

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