David Sebastian Fischer

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Fabian J TheisHelmholtz Munich, Technical University of MunichAdresse e-mail validée de helmholtz-muenchen.de
Giovanni PallaHelmholtz Center MunichAdresse e-mail validée de helmholtz-muenchen.de
Sabrina RichterPhD student Computational Biology and Machine Learning, Helmholtz Zentrum München, GermanyAdresse e-mail validée de helmholtz-muenchen.de
Heiko LickertProfessor der Biologie, Technische Universität MünchenAdresse e-mail validée de helmholtz-muenchen.de
Anna C. SchaarTechnical University MunichAdresse e-mail validée de tum.de
Isaac VirshupSoftware Engineer, Helmholtz MunichAdresse e-mail validée de helmholtz-munich.de
Sophie TritschlerCellarityAdresse e-mail validée de cellarity.com
Nir YosefAssociate Professor, Department of Systems Immunology, Weizmann Institute of ScienceAdresse e-mail validée de berkeley.edu
Mo LotfollahiWelcome Sanger institute,Adresse e-mail validée de sanger.ac.uk
Alex WolfLaminAdresse e-mail validée de lamin.ai
Ignacio L. IbarraBioptimusAdresse e-mail validée de bioptimus.com
Hannah SpitzerUniversity Hospital Munich (LMU) & Helmholtz MunichAdresse e-mail validée de helmholtz-muenchen.de
Philipp AngererSoftware Developer, CellarityAdresse e-mail validée de cellarity.com
Andreas-David BrunnerMax Planck Institute of BiochemistryAdresse e-mail validée de biochem.mpg.de
Matthias MannMax Planck Institute of Biochemistry, Munich and CPR, University of CopenhagenAdresse e-mail validée de biochem.mpg.de
Matthias HeinigInstitute of Computational Biology, Helmholtz Zentrum MünchenAdresse e-mail validée de helmholtz-muenchen.de
Elisabeth BinderMax Planck Institute of PsychiatryAdresse e-mail validée de psych.mpg.de
Cristiana CruceanuKarolinska InstitutetAdresse e-mail validée de ki.se
Silvia CappelloMax Planck Institute of PsychiatryAdresse e-mail validée de psych.mpg.de
Rene MaehrUMass Medical School/ Program in Molecular MedicineAdresse e-mail validée de umassmed.edu

Suivre

David Sebastian Fischer

Medical University of Vienna

Adresse e-mail validée de meduniwien.ac.at - Page d'accueil

machine learning computational biology omics human disease


Titre Trier par citations Trier par année Trier par titre	Citée par Citée par	Année
Squidpy: a scalable framework for spatial omics analysis G Palla, H Spitzer, M Klein, D Fischer, AC Schaar, LB Kuemmerle, ... Nature Methods, 1-8, 2022	611	2022
Single-cell meta-analysis of SARS-CoV-2 entry genes across tissues and demographics C Muus, MD Luecken, G Eraslan, L Sikkema, A Waghray, G Heimberg, ... Nature medicine 27 (3), 546-559, 2021	601*	2021
Ultra-high sensitivity mass spectrometry quantifies single-cell proteome changes upon perturbation AD Brunner, M Thielert, C Vasilopoulou, C Ammar, F Coscia, A Mund, ... Molecular Systems Biology 18 (3), e10798, 2022	439	2022
Spatial components of molecular tissue biology G Palla, DS Fischer, A Regev, FJ Theis Nature Biotechnology 40 (3), 308-318, 2022	237	2022
Single cells make big data: new challenges and opportunities in transcriptomics P Angerer, L Simon, S Tritschler, FA Wolf, D Fischer, FJ Theis Current Opinion in Systems Biology 4, 85-91, 2017	228	2017
Concepts and limitations for learning developmental trajectories from single cell genomics S Tritschler, M Büttner, DS Fischer, M Lange, V Bergen, H Lickert, ... Development 146 (12), 2019	200	2019
Modeling intercellular communication in tissues using spatial graphs of cells DS Fischer, AC Schaar, FJ Theis Nature Biotechnology, 1-5, 2022	158*	2022
The scverse project provides a computational ecosystem for single-cell omics data analysis I Virshup, D Bredikhin, L Heumos, G Palla, G Sturm, A Gayoso, I Kats, ... Nature biotechnology 41 (5), 604-606, 2023	140	2023
Impulse model-based differential expression analysis of time course sequencing data DS Fischer, FJ Theis, N Yosef Nucleic acids research 46 (20), e119-e119, 2018	133	2018
Inferring population dynamics from single-cell RNA-sequencing time series data DS Fischer, AK Fiedler, EM Kernfeld, RMJ Genga, A Bastidas-Ponce, ... Nature biotechnology 37 (4), 461-468, 2019	124	2019
Predicting antigen specificity of single T cells based on TCR CDR 3 regions DS Fischer, Y Wu, B Schubert, FJ Theis Molecular systems biology 16 (8), e9416, 2020	113	2020
EpiScanpy: integrated single-cell epigenomic analysis A Danese, ML Richter, K Chaichoompu, DS Fischer, FJ Theis, ... Nature Communications 12 (1), 1-8, 2021	98	2021
MPRAnalyze: statistical framework for massively parallel reporter assays T Ashuach, DS Fischer, A Kreimer, N Ahituv, FJ Theis, N Yosef Genome biology 20, 1-17, 2019	82	2019
Group testing for SARS-CoV-2 allows for up to 10-fold efficiency increase across realistic scenarios and testing strategies CM Verdun, T Fuchs, P Harar, D Elbrächter, DS Fischer, J Berner, ... Frontiers in Public Health 9, 583377, 2021	77	2021
Cell-type-specific impact of glucocorticoid receptor activation on the developing brain: a cerebral organoid study C Cruceanu, L Dony, AC Krontira, DS Fischer, S Roeh, R Di Giaimo, ... American Journal of Psychiatry 179 (5), 375-387, 2022	63*	2022
Toward modeling metabolic state from single-cell transcriptomics K Hrovatin, DS Fischer, FJ Theis Molecular Metabolism 57, 101396, 2022	45	2022
Graph representation learning for single-cell biology L Hetzel, DS Fischer, S Günnemann, FJ Theis Current Opinion in Systems Biology 28, 100347, 2021	41	2021
Single-cell RNA sequencing reveals ex vivo signatures of SARS-CoV-2-reactive T cells through ‘reverse phenotyping’ DS Fischer, M Ansari, KI Wagner, S Jarosch, Y Huang, CH Mayr, M Strunz, ... Nature Communications 12 (1), 1-14, 2021	35	2021
Modeling fragment counts improves single-cell ATAC-seq analysis LD Martens, DS Fischer, VA Yépez, FJ Theis, J Gagneur Nature Methods, 1-4, 2023	29	2023
Sfaira accelerates data and model reuse in single cell genomics DS Fischer, L Dony, M König, A Moeed, L Zappia, L Heumos, S Tritschler, ... Genome Biology 22 (1), 1-21, 2021	29	2021

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