Optimal-transport analysis of single-cell gene expression identifies developmental trajectories in reprogramming G Schiebinger, J Shu, M Tabaka, B Cleary, V Subramanian, A Solomon, ...
Cell 176 (4), 928-943. e22, 2019
836 2019 A single-cell Arabidopsis root atlas reveals developmental trajectories in wild-type and cell identity mutants R Shahan, CW Hsu, TM Nolan, BJ Cole, IW Taylor, L Greenstreet, ...
Developmental cell 57 (4), 543-560. e9, 2022
226 2022 The alternating descent conditional gradient method for sparse inverse problems N Boyd, G Schiebinger, B Recht
SIAM Journal on Optimization 27 (2), 616-639, 2017
222 2017 Superresolution without separation G Schiebinger, E Robeva, B Recht
Information and Inference: A Journal of the IMA 7 (1), 1-30, 2018
89 2018 Statistical optimal transport via factored couplings A Forrow, JC Hütter, M Nitzan, P Rigollet, G Schiebinger, J Weed
The 22nd International Conference on Artificial Intelligence and Statistics …, 2019
87 2019 The geometry of kernelized spectral clustering G Schiebinger, MJ Wainwright, B Yu
82 2015 LineageOT is a unified framework for lineage tracing and trajectory inference A Forrow, G Schiebinger
Nature communications 12 (1), 4940, 2021
73 2021 Reconstruction of developmental landscapes by optimal-transport analysis of single-cell gene expression sheds light on cellular reprogramming G Schiebinger, J Shu, M Tabaka, B Cleary, V Subramanian, A Solomon, ...
BioRxiv, 191056, 2017
73 2017 Transcriptional instability is not a universal attribute of aging LA Warren, DJ Rossi, GR Schiebinger, IL Weissman, SK Kim, SR Quake
Aging cell 6 (6), 775-782, 2007
64 2007 Brassinosteroid gene regulatory networks at cellular resolution in the Arabidopsis root TM Nolan, N Vukašinović, CW Hsu, J Zhang, I Vanhoutte, R Shahan, ...
Science 379 (6639), eadf4721, 2023
60 2023 Toward a mathematical theory of trajectory inference H Lavenant, S Zhang, YH Kim, G Schiebinger
The Annals of Applied Probability 34 (1A), 428-500, 2024
57 2024 Sharp Inequalities for A Guntuboyina, S Saha, G Schiebinger
IEEE transactions on information theory 60 (1), 104-121, 2013
52 2013 Developmental single-cell transcriptomics in the Lytechinus variegatus sea urchin embryo AJ Massri, L Greenstreet, A Afanassiev, A Berrio, GA Wray, G Schiebinger, ...
Development 148 (19), dev198614, 2021
51 2021 Optimal transport analysis reveals trajectories in steady-state systems S Zhang, A Afanassiev, L Greenstreet, T Matsumoto, G Schiebinger
PLoS computational biology 17 (12), e1009466, 2021
35 2021 Trajectory inference via mean-field langevin in path space L Chizat, S Zhang, M Heitz, G Schiebinger
Advances in Neural Information Processing Systems 35, 16731-16742, 2022
24 2022 Reconstructing developmental landscapes and trajectories from single-cell data G Schiebinger
Current Opinion in Systems Biology 27, 100351, 2021
18 2021 Manifold learning with sparse regularised optimal transport S Zhang, G Mordant, T Matsumoto, G Schiebinger
arXiv preprint arXiv:2307.09816, 2023
15 * 2023 Wasserstein mirror gradient flow as the limit of the Sinkhorn algorithm N Deb, YH Kim, S Pal, G Schiebinger
arXiv preprint arXiv:2307.16421, 2023
12 2023 Optimal transport for single-cell and spatial omics C Bunne, G Schiebinger, A Krause, A Regev, M Cuturi
Nature Reviews Methods Primers 4 (1), 58, 2024
11 2024 Methodologies for following EMT in vivo at single cell resolution AJ Massri, GR Schiebinger, A Berrio, L Wang, GA Wray, DR McClay
The Epithelial-to Mesenchymal Transition: Methods and Protocols, 303-314, 2021
6 2021