| VDJdb: a curated database of T-cell receptor sequences with known antigen specificity M Shugay, DV Bagaev, IV Zvyagin, RM Vroomans, JC Crawford, G Dolton, ... Nucleic acids research 46 (D1), D419-D427, 2018 | 507 | 2018 |
| VDJdb in 2019: database extension, new analysis infrastructure and a T-cell receptor motif compendium DV Bagaev, RMA Vroomans, J Samir, U Stervbo, C Rius, G Dolton, ... Nucleic acids research 48 (D1), D1057-D1062, 2020 | 370 | 2020 |
| Chemotactic migration of T cells towards dendritic cells promotes the detection of rare antigens RMA Vroomans, AFM Marée, RJ De Boer, JB Beltman PLOS Computational Biology 8 (11), e1002763, 2012 | 54 | 2012 |
| Towards evolutionary predictions: Current promises and challenges MT Wortel, D Agashe, SF Bailey, C Bank, K Bisschop, T Blankers, ... Evolutionary applications 16 (1), 3-21, 2023 | 38 | 2023 |
| Segment-specific adhesion as a driver of convergent extension RMA Vroomans, P Hogeweg, KHWJ ten Tusscher PLoS computational biology 11 (2), e1004092, 2015 | 34 | 2015 |
| Evolution of multicellularity by collective integration of spatial information ES Colizzi, RMA Vroomans, RMH Merks Elife 9, e56349, 2020 | 31 | 2020 |
| Revealing factors determining immunodominant responses against dominant epitopes W Ritmahan, C Kesmir, RMA Vroomans Immunogenetics 72 (1), 109-118, 2020 | 25 | 2020 |
| In silico evo-devo: reconstructing stages in the evolution of animal segmentation RMA Vroomans, P Hogeweg, KHWJ Ten Tusscher EvoDevo 7, 1-20, 2016 | 22 | 2016 |
| On the evolution and development of morphological complexity: A view from gene regulatory networks PF Hagolani, R Zimm, R Vroomans, I Salazar-Ciudad PLoS computational biology 17 (2), e1008570, 2021 | 18 | 2021 |
| Evolution of genome fragility enables microbial division of labor ES Colizzi, B van Dijk, RMH Merks, DE Rozen, RMA Vroomans Molecular Systems Biology 19 (3), e11353, 2023 | 11 | 2023 |
| Systems biology approach pinpoints minimum requirements for auxin distribution during fruit opening XR Li, RMA Vroomans, S Fox, VA Grieneisen, L Østergaard, AFM Marée Molecular plant 12 (6), 863-878, 2019 | 9 | 2019 |
| The why, what and how of predicting evolution across biology: from disease to biotechnology to biodiversity MT Wortel, D Agashe, SF Bailey, C Bank, K Bisschop, T Blankers, ... EvoEvoRxiv Preprints, 2022 | 7 | 2022 |
| Around the clock: gradient shape and noise impact the evolution of oscillatory segmentation dynamics RMA Vroomans, P Hogeweg, KHWJ Ten Tusscher EvoDevo 9 (24), 2018 | 7 | 2018 |
| Modelling the evolution of novelty: a review ES Colizzi, P Hogeweg, RMA Vroomans Essays in Biochemistry 66 (6), 727-735, 2022 | 5 | 2022 |
| Modelling asymmetric somitogenesis: Deciphering the mechanisms behind species differences RMA Vroomans, KHWJ Ten Tusscher Developmental biology 427 (1), 21-34, 2017 | 5 | 2017 |
| Evolution of selfish multicellularity: collective organisation of individual spatio-temporal regulatory strategies RMA Vroomans, ES Colizzi BMC Ecology and Evolution 23, 35, 2023 | 4 | 2023 |
| Modeling evolution of developmental gene regulatory networks RMA Vroomans, KHWJ Ten Tusscher Evolutionary Developmental Biology: A Reference Guide, 1013-1029, 2021 | 1 | 2021 |
| “Computational evolution of neural and morphological development”, Yaochu Jin, ISBN 978-981-99-1853-9, Springer, 2023 R Vroomans Genetic Programming and Evolvable Machines 26 (1), 1, 2025 | | 2025 |
| A special issue of Essays in Biochemistry on evolutionary developmental biology AP McGregor, AD Buffry, RMA Vroomans Essays in Biochemistry 66 (6), 703-705, 2022 | | 2022 |
| In preprints: new insights into root stem cells and their diversity R Vroomans, Y Helariutta Development 149 (13), dev201005, 2022 | | 2022 |
