| DNA sensing in mismatch repair-deficient tumor cells is essential for anti-tumor immunity C Lu, J Guan, S Lu, Q Jin, B Rousseau, T Lu, D Stephens, H Zhang, J Zhu, ... Cancer Cell 39 (1), 96-108. e6, 2021 | 221 | 2021 |
| Investigation of antigen-specific T cell receptor clusters in human cancers H Zhang, L Liu, J Zhang, J Chen, J Ye, SA Shukla, J Qiao, X Zhan, ... Clinical Cancer Research, 2020 | 129 | 2020 |
| GIANA allows computationally-efficient TCR clustering and multi-disease repertoire classification by isometric transformation H Zhang, X Zhan, B Li Nature Communications 12 (1), 4699, 2021 | 99 | 2021 |
| Breast cancer prognosis signature: linking risk stratification to disease subtypes F Yu, F Quan, J Xu, Y Zhang, Y Xie, J Zhang, Y Lan, H Yuan, H Zhang, ... Briefings in bioinformatics 20 (6), 2130-2140, 2019 | 85 | 2019 |
| Identifying mutual exclusivity across cancer genomes: computational approaches to discover genetic interaction and reveal tumor vulnerability Y Deng, S Luo, C Deng, T Luo, W Yin, H Zhang, Y Zhang, X Zhang, Y Lan, ... Briefings in Bioinformatics 20 (1), 254-266, 2019 | 65 | 2019 |
| AXL targeting restores PD-1 blockade sensitivity of STK11/LKB1 mutant NSCLC through expansion of TCF1+ CD8 T cells H Li, Z Liu, L Liu, H Zhang, C Han, L Girard, H Park, A Zhang, C Dong, ... Cell Reports Medicine 3 (3), 2022 | 64 | 2022 |
| Concurrent delivery of immune checkpoint blockade modulates T cell dynamics to enhance neoantigen vaccine-generated antitumor immunity L Liu, J Chen, H Zhang, J Ye, C Moore, C Lu, Y Fang, YX Fu, B Li Nature Cancer 3 (4), 437-452, 2022 | 47 | 2022 |
| Sex difference of mutation clonality in diffuse glioma evolution H Zhang, J Liao, X Zhang, E Zhao, X Liang, S Luo, J Shi, F Yu, J Xu, ... Neuro-Oncology 21 (2), 201-213, 2019 | 44 | 2019 |
| Identifying core gene modules in glioblastoma based on multilayer factor-mediated dysfunctional regulatory networks through integrating multi-dimensional genomic data Y Ping, Y Deng, L Wang, H Zhang, Y Zhang, C Xu, H Zhao, H Fan, F Yu, ... Nucleic acids research 43 (4), 1997-2007, 2015 | 43 | 2015 |
| Systematic investigation of mitochondrial transfer between cancer cells and T cells at single-cell resolution H Zhang, X Yu, J Ye, H Li, J Hu, Y Tan, Y Fang, E Akbay, F Yu, C Weng, ... Cancer Cell 41 (10), 1788-1802. e10, 2023 | 32 | 2023 |
| Integrating multi-omics for uncovering the architecture of cross-talking pathways in breast cancer L Wang, Y Xiao, Y Ping, J Li, H Zhao, F Li, J Hu, H Zhang, Y Deng, J Tian, ... PloS one 9 (8), e104282, 2014 | 31 | 2014 |
| Cooperative genomic alteration network reveals molecular classification across 12 major cancer types H Zhang, Y Deng, Y Zhang, Y Ping, H Zhao, L Pang, X Zhang, L Wang, ... Nucleic Acids Research 45 (2), 567-582, 2017 | 26 | 2017 |
| MeSiC: A model-based method for estimating 5 mC levels at single-CpG resolution from MeDIP-seq Y Xiao, F Yu, L Pang, H Zhao, L Liu, G Zhang, T Liu, H Zhang, H Fan, ... Scientific Reports 5 (1), 14699, 2015 | 13 | 2015 |
| IndividualizedPath: identifying genetic alterations contributing to the dysfunctional pathways in glioblastoma individuals Y Ping, H Zhang, Y Deng, L Wang, H Zhao, L Pang, H Fan, C Xu, F Li, ... Molecular BioSystems 10 (8), 2031-2042, 2014 | 12 | 2014 |
| SEECancer: a resource for somatic events in evolution of cancer genome H Zhang, S Luo, X Zhang, J Liao, F Quan, E Zhao, C Zhou, F Yu, W Yin, ... Nucleic Acids Research 46 (D1), D1018-D1026, 2018 | 10 | 2018 |
| Transcriptome analysis reveals a long non-coding RNA signature to improve biochemical recurrence prediction in prostate cancer J Xu, Y Lan, F Yu, S Zhu, J Ran, J Zhu, H Zhang, L Li, S Cheng, Y Xiao, ... Oncotarget 9 (38), 24936, 2018 | 8 | 2018 |
| Publisher Correction: GIANA allows computationally-efficient TCR clustering and multi-disease repertoire classification by isometric transformation H Zhang, X Zhan, B Li Nature Communications 12, 2021 | 3 | 2021 |
| 602 AXL targeting with bemcentinb restores PD-1 blockade sensitivity of STK11/LKB1 mutant NSCLC through innate immune cell mediated expansion of TCF1+ CD8 T cells H Li, Z Liu, L Liu, H Zhang, C Han, L Girard, H Park, A Zhang, C Dong, ... Journal for ImmunoTherapy of Cancer 9 (Suppl 2), 2021 | 2 | 2021 |
| Interpretable GWAS by linking clinical phenotypes to quantifiable immune repertoire components Y Tan, L Wang, H Zhang, M Pan, DJ Liu, X Zhan, B Li Communications Biology 7 (1), 1357, 2024 | | 2024 |
| A novel computational tool for tracking cancer energy hijacking from immune cells H Zhang, B Li Clinical and Translational Medicine 14 (1), e1533, 2024 | | 2024 |
