webTWAS: a resource for disease candidate susceptibility genes identified by transcriptome-wide association study C Cao, J Wang, D Kwok, F Cui, Z Zhang, D Zhao, MJ Li, Q Zou Nucleic acids research 50 (D1), D1123-D1130, 2022 | 349 | 2022 |
Toward smarter management and recovery of municipal solid waste: A critical review on deep learning approaches K Lin, Y Zhao, JH Kuo, H Deng, F Cui, Z Zhang, M Zhang, C Zhao, X Gao, ... Journal of Cleaner Production 346, 130943, 2022 | 111 | 2022 |
Single-cell RNA analysis reveals the potential risk of organ-specific cell types vulnerable to SARS-CoV-2 infections Z Zhang, F Cui, C Cao, Q Wang, Q Zou Computers in biology and medicine 140, 105092, 2022 | 99 | 2022 |
Isolation and Identification of the Phenolic Compounds from the Roots of Sanguisorba officinalis L. and Their Antioxidant Activities S Zhang, X Liu, ZL Zhang, L He, Z Wang, GS Wang Molecules 17 (12), 13917-13922, 2012 | 77 | 2012 |
Terpene Glycosides from the Roots of Sanguisorba officinalis L. and Their Hemostatic Activities W Sun, ZL Zhang, X Liu, S Zhang, L He, Z Wang, GS Wang Molecules 17 (7), 7629-7636, 2012 | 68 | 2012 |
Sequence representation approaches for sequence-based protein prediction tasks that use deep learning F Cui, Z Zhang, Q Zou Briefings in Functional Genomics 20 (1), 61-73, 2021 | 61 | 2021 |
Critical downstream analysis steps for single-cell RNA sequencing data Z Zhang, F Cui, C Lin, L Zhao, C Wang, Q Zou Briefings in bioinformatics 22 (5), bbab105, 2021 | 48 | 2021 |
Goals and approaches for each processing step for single-cell RNA sequencing data Z Zhang, F Cui, C Wang, L Zhao, Q Zou Briefings in Bioinformatics 22 (4), bbaa314, 2021 | 44 | 2021 |
Protein–DNA/RNA interactions: Machine intelligence tools and approaches in the era of artificial intelligence and big data F Cui, Z Zhang, C Cao, Q Zou, D Chen, X Su Proteomics 22 (8), 2100197, 2022 | 27 | 2022 |
webSCST: an interactive web application for single-cell RNA-sequencing data and spatial transcriptomic data integration Z Zhang, F Cui, W Su, L Dou, A Xu, C Cao, Q Zou Bioinformatics 38 (13), 3488-3489, 2022 | 26 | 2022 |
DeepMC-iNABP: Deep learning for multiclass identification and classification of nucleic acid-binding proteins F Cui, S Li, Z Zhang, M Sui, C Cao, AEL Hesham, Q Zou Computational and Structural Biotechnology Journal 20, 2020-2028, 2022 | 26 | 2022 |
Single-cell RNA sequencing analysis identifies key genes in brain metastasis from lung adenocarcinoma Z Zhang, F Cui, M Zhou, S Wu, Q Zou, B Gao Current Gene Therapy 21 (4), 338-348, 2021 | 25 | 2021 |
Machine learning-based prediction model for distant metastasis of breast cancer H Duan, Y Zhang, H Qiu, X Fu, C Liu, X Zang, A Xu, Z Wu, X Li, Q Zhang, ... Computers in Biology and Medicine 169, 107943, 2024 | 13 | 2024 |
RAVAR: a curated repository for rare variant–trait associations C Cao, M Shao, C Zuo, D Kwok, L Liu, Y Ge, Z Zhang, F Cui, M Chen, ... Nucleic Acids Research 52 (D1), D990-D997, 2024 | 12 | 2024 |
RNA-associated co-expression network identifies novel biomarkers for digestive system cancer Z Chen, Z Shen, Z Zhang, D Zhao, L Xu, L Zhang Frontiers in Genetics 12, 659788, 2021 | 12 | 2021 |
iKcr_CNN: A novel computational tool for imbalance classification of human nonhistone crotonylation sites based on convolutional neural networks with focal loss L Dou, Z Zhang, L Xu, Q Zou Computational and Structural Biotechnology Journal 20, 3268-3279, 2022 | 11 | 2022 |
AGF-PPIS: a protein–protein interaction site predictor based on an attention mechanism and graph convolutional networks X Fu, Y Yuan, H Qiu, H Suo, Y Song, A Li, Y Zhang, C Xiao, Y Li, L Dou, ... Methods 222, 142-151, 2024 | 9 | 2024 |
A comprehensive survey of dimensionality reduction and clustering methods for single-cell and spatial transcriptomics data Y Sun, L Kong, J Huang, H Deng, X Bian, X Li, F Cui, L Dou, C Cao, ... Briefings in Functional Genomics, elae023, 2024 | 5 | 2024 |
PSAC-6mA: 6mA site identifier using self-attention capsule network based on sequence-positioning Z Zhou, C Xiao, J Yin, J She, H Duan, C Liu, X Fu, F Cui, Q Qi, Z Zhang Computers in Biology and Medicine 171, 108129, 2024 | 5 | 2024 |
Integration tools for scRNA-seq data and spatial transcriptomics sequencing data C Yan, Y Zhu, M Chen, K Yang, F Cui, Q Zou, Z Zhang Briefings in Functional Genomics, elae002, 2024 | 5 | 2024 |