| Genome-scale metabolic modeling enables in-depth understanding of big data A Passi, JD Tibocha-Bonilla, M Kumar, D Tec-Campos, K Zengler, ... Metabolites 12 (1), 14, 2022 | 105 | 2022 |
| Advances in metabolic modeling of oleaginous microalgae JD Tibocha-Bonilla, C Zuñiga, RD Godoy-Silva, K Zengler Biotechnology for biofuels 11, 1-15, 2018 | 81 | 2018 |
| The sum is greater than the parts: exploiting microbial communities to achieve complex functions LS Zaramela, O Moyne, M Kumar, C Zuniga, JD Tibocha-Bonilla, ... Current Opinion in Biotechnology 67, 149-157, 2021 | 45 | 2021 |
| Modeling of nitrogen fixation and polymer production in the heterotrophic diazotroph Azotobacter vinelandii DJ D Tec-Campos, C Zuñiga, A Passi, J Del Toro, JD Tibocha-Bonilla, ... Metabolic engineering communications 11, e00132, 2020 | 31 | 2020 |
| Dynamic resource allocation drives growth under nitrogen starvation in eukaryotes JD Tibocha-Bonilla, M Kumar, A Richelle, RD Godoy-Silva, K Zengler, ... NPJ systems biology and applications 6 (1), 14, 2020 | 30* | 2020 |
| Flux balance analysis of the ammonia-oxidizing bacterium Nitrosomonas europaea ATCC19718 unravels specific metabolic activities while degrading toxic … G Canto-Encalada, D Tec-Campos, JD Tibocha-Bonilla, K Zengler, ... PLoS Computational Biology 18 (2), e1009828, 2022 | 12 | 2022 |
| Predicting stress response and improved protein overproduction in Bacillus subtilis JD Tibocha-Bonilla, C Zuñiga, A Lekbua, C Lloyd, K Rychel, K Short, ... NPJ Systems Biology and Applications 8 (1), 50, 2022 | 11 | 2022 |
| Kinetic, metabolic, and statistical analytics: Addressing metabolic transport limitations among organelles and microbial communities C Zuniga, JD Tibocha-Bonilla, MJ Betenbaugh Current Opinion in Biotechnology 71, 91-97, 2021 | 7 | 2021 |
| The genome-scale metabolic model for the purple non-sulfur bacterium Rhodopseudomonas palustris Bis A53 accurately predicts phenotypes under … D Tec-Campos, C Posadas, JD Tibocha-Bonilla, D Thiruppathy, N Glonek, ... PLOS Computational Biology 19 (8), e1011371, 2023 | 5 | 2023 |
| Constraint-based modeling of diatoms metabolism and quantitative biology approaches M Kumar, C Zuniga, JD Tibocha-Bonilla, SR Smith, J Coker, AE Allen, ... The Molecular Life of Diatoms, 775-808, 2022 | 3 | 2022 |
| Mixotrophic growth of a ubiquitous marine diatom M Kumar, JD Tibocha-Bonilla, Z Füssy, C Lieng, SM Schwenck, ... Science advances 10 (29), eado2623, 2024 | 2 | 2024 |
| A multiscale model predicts the sensitivity of Chlorella vulgaris to light and nitrogen levels in photobioreactors JD Tibocha-Bonilla, C Zuniga, JT Broddrick, K Zengler, RD Godoy-Silva bioRxiv, 2021.04. 14.439858, 2021 | 2 | 2021 |
| Integrating Metabolic Modeling and High‐Throughput Data to Characterize Diatoms Metabolism JD Tibocha‐Bonilla, M Kumar, K Zengler, C Zuniga The Mathematical Biology of Diatoms, 165-191, 2023 | 1 | 2023 |
| A genome-scale metabolic model for the denitrifying bacterium Thauera sp. MZ1T accurately predicts degradation of pollutants and production of polymers D Tec-Campos, JD Tibocha-Bonilla, C Jiang, A Passi, D Thiruppathy, ... PLOS Computational Biology 21 (1), e1012736, 2025 | | 2025 |
| Deciphering metabolic differentiation during Bacillus subtilis sporulation JD Tibocha-Bonilla, J Lyda, E Riley, K Pogliano, K Zengler Nature Communications 16 (1), 129, 2025 | | 2025 |
| Enhancing the Reconstruction and Application of Models of Metabolism and Gene Expression JD Tibocha Bonilla UC San Diego, 2024 | | 2024 |
| Proteome allocation of the microbiome reveals how diet and metabolic dysbiosis impact disease JD Tibocha-Bonilla, R Santibanez-Palominos, Y Weng, M Kumar, ... bioRxiv, 2024.11. 21.624724, 2024 | | 2024 |
| Prediction of the dynamic behavior of photoautotrophic growth of an oleaginous alga using a multiscale metabolic model JD Tibocha Bonilla Departamento de Ingeniería Química y Ambiental, 2019 | | 2019 |
| Leveraging AI to generate fast and accurate surrogate models of bacteria to predict processes in terrestrial systems JD Tibocha-Bonilla, R Santibáñez-Palominos, M Neal, K Zengler | | |
Cristal ZunigaAssistant Professor San Diego State UniversityAdresse e-mail validée de sdsu.edu